Cow genome map
| Conread name: | Tra1-TCH01C040031 |
| Conread position: | 167-811 |
| Cow position: | chr19:439304-439941 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 196 |
| Conread position: | 171-330 |
| Cow position: | chr19:439115-439273 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 52, 23 |
| Conread position: | 171-760 |
| Cow position: | chr19:893266-893846 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 192 |
| Conread position: | 172-456 |
| Cow position: | chr19:35377129-35376850 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 57, 83 |
| Conread position: | 172-612 |
| Cow position: | chr19:6553948-6553518 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 83 |
| Conread position: | 172-812 |
| Cow position: | chr19:28581310-28581934 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 188 |
| Conread position: | 175-395 |
| Cow position: | chr19:42648769-42648989 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 170 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 204, 182 |
| Conread position: | 176-345 |
| Cow position: | chr19:5729173-5729001 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 176-640 |
| Cow position: | chr19:33873770-33873304 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 183 |
| Conread position: | 176-812 |
| Cow position: | chr19:204305-203667 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 183 |
| Conread position: | 176-812 |
| Cow position: | chr19:4385813-4385189 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 33 |
| Conread position: | 176-812 |
| Cow position: | chr19:10671962-10672602 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 187 |
| Conread position: | 176-812 |
| Cow position: | chr19:33941954-33941316 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 112 |
| Conread position: | 176-812 |
| Cow position: | chr19:39390852-39390227 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 183 |
| Conread position: | 177-324 |
| Cow position: | chr19:341564-341416 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 45, 137 |
| Conread position: | 177-483 |
| Cow position: | chr19:2274035-2274338 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 182 |
| Conread position: | 177-811 |
| Cow position: | chr19:7488656-7488018 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 186 |
| Conread position: | 177-812 |
| Cow position: | chr19:172554-171915 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 186 |
| Conread position: | 177-812 |
| Cow position: | chr19:40852095-40852726 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 186 |
| Conread position: | 178-301 |
| Cow position: | chr19:43027-42902 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 178-307 |
| Cow position: | chr19:27052508-27052638 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 44, 16 |
| Conread position: | 178-355 |
| Cow position: | chr19:29209939-29209762 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 44, 128 |
| Conread position: | 178-355 |
| Cow position: | chr19:40817361-40817540 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 178-357 |
| Cow position: | chr19:28376828-28376645 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 149 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 178-503 |
| Cow position: | chr19:52151488-52151814 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 182 |
| Conread position: | 178-516 |
| Cow position: | chr19:20105055-20104717 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 182 |
| Conread position: | 178-536 |
| Cow position: | chr19:687405-687049 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 99 |
| Conread position: | 178-735 |
| Cow position: | chr19:32223106-32223647 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 26 |
| Conread position: | 178-782 |
| Cow position: | chr19:39546953-39546371 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 58 |
| Conread position: | 178-810 |
| Cow position: | chr19:170405-171037 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 160 |
| Conread position: | 178-810 |
| Cow position: | chr19:7342410-7341778 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 181 |
| Conread position: | 178-810 |
| Cow position: | chr19:43144058-43143422 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 181 |
| Conread position: | 178-812 |
| Cow position: | chr19:75927-76528 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 181 |
| Conread position: | 178-812 |
| Cow position: | chr19:1032417-1031818 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 181 |
| Conread position: | 178-812 |
| Cow position: | chr19:32665867-32665237 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 118 |
| Conread position: | 179-459 |
| Cow position: | chr19:352650-352933 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 50, 182 |
| Conread position: | 183-279 |
| Cow position: | chr19:5208509-5208411 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 84 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 183-803 |
| Cow position: | chr19:28593600-28592993 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 65 |
| Conread position: | 183-810 |
| Cow position: | chr19:32211736-32212354 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 176 |
| Conread position: | 184-810 |
| Cow position: | chr19:772935-772316 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 175 |
| Conread position: | 184-812 |
| Cow position: | chr19:416997-416353 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 179 |
| Conread position: | 185-810 |
| Cow position: | chr19:38230-37614 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 170 |
| Conread position: | 200-812 |
| Cow position: | chr19:39688847-39688254 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 63 |
| Conread position: | 202-809 |
| Cow position: | chr19:32245002-32244387 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 157 |
| Conread position: | 205-621 |
| Cow position: | chr19:349976-350387 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 154 |
| Conread position: | 209-808 |
| Cow position: | chr19:20110945-20111516 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 383 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 20, 43 |
| Conread position: | 213-812 |
| Cow position: | chr19:40887350-40887941 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 25 |
| Conread position: | 221-357 |
| Cow position: | chr19:4532487-4532623 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 221-663 |
| Cow position: | chr19:42249101-42248669 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 103 |
| Conread position: | 231-654 |
| Cow position: | chr19:42299209-42299633 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 168 |
| Conread position: | 233-810 |
| Cow position: | chr19:261728-261146 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 46 |
| Conread position: | 242-811 |
| Cow position: | chr19:35979543-35978973 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 115 |
| Conread position: | 262-795 |
| Cow position: | chr19:30755436-30754897 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 50 |
| Conread position: | 266-798 |
| Cow position: | chr19:31341974-31341438 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 149 |
| Conread position: | 270-687 |
| Cow position: | chr19:359260-359672 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 78 |
| Conread position: | 271-573 |
| Cow position: | chr19:32237440-32237736 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 23 |
| Conread position: | 281-812 |
| Cow position: | chr19:30372511-30371980 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 58 |
| Conread position: | 294-812 |
| Cow position: | chr19:34640-34127 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 41 |
| Conread position: | 301-812 |
| Cow position: | chr19:55078963-55078450 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 60 |
| Conread position: | 306-674 |
| Cow position: | chr19:543414-543784 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 53 |
| Conread position: | 319-779 |
| Cow position: | chr19:20125802-20125367 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 13 |
| Conread position: | 347-810 |
| Cow position: | chr19:548535-548102 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 311 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 34, 14 |
| Conread position: | 352-812 |
| Cow position: | chr19:29209726-29209271 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 48 |
| Conread position: | 373-697 |
| Cow position: | chr19:27052623-27052943 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 27 |
| Conread position: | 389-812 |
| Cow position: | chr19:4532625-4533039 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 15 |
| Conread position: | 398-809 |
| Cow position: | chr19:32193699-32193291 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 92 |
| Conread position: | 414-674 |
| Cow position: | chr19:28376627-28376374 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 414-752 |
| Cow position: | chr19:561403-561730 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 120, 20 |
| Conread position: | 448-808 |
| Cow position: | chr19:4252288-4252649 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 25 |
| Conread position: | 496-810 |
| Cow position: | chr19:52152237-52152543 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 38, 209 |
| Conread position: | 501-812 |
| Cow position: | chr19:685862-685559 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 33, 112 |
| Conread position: | 516-812 |
| Cow position: | chr19:377871-378181 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 18, 70 |
| Conread position: | 532-779 |
| Cow position: | chr19:35376543-35376292 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 57, 111 |
| Conread position: | 559-782 |
| Cow position: | chr19:32237899-32238130 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 639-812 |
| Cow position: | chr19:33873117-33872948 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 87, 98 |
Show alignments to all cow chromosomes.