Cow genome map
| Conread name: | Tra1-TCH01C040031 |
| Conread position: | 171-812 |
| Cow position: | chr20:21914633-21913988 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 192 |
| Conread position: | 173-812 |
| Cow position: | chr20:3271008-3270384 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 83 |
| Conread position: | 175-637 |
| Cow position: | chr20:15292312-15291855 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 184 |
| Conread position: | 175-812 |
| Cow position: | chr20:13763206-13762567 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 185 |
| Conread position: | 176-640 |
| Cow position: | chr20:8003925-8004392 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 170 |
| Conread position: | 176-655 |
| Cow position: | chr20:29948800-29948337 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 183 |
| Conread position: | 176-683 |
| Cow position: | chr20:35119870-35119365 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 22 |
| Conread position: | 176-812 |
| Cow position: | chr20:5535238-5534603 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 167 |
| Conread position: | 176-812 |
| Cow position: | chr20:12438460-12439100 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 187 |
| Conread position: | 176-812 |
| Cow position: | chr20:15097576-15098206 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 188 |
| Conread position: | 176-812 |
| Cow position: | chr20:23469365-23469999 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 116 |
| Conread position: | 176-812 |
| Cow position: | chr20:23799186-23798544 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 176-812 |
| Cow position: | chr20:25850690-25851329 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 187 |
| Conread position: | 176-812 |
| Cow position: | chr20:27869498-27868859 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 187 |
| Conread position: | 176-812 |
| Cow position: | chr20:28161071-28160442 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 112 |
| Conread position: | 176-812 |
| Cow position: | chr20:28565295-28565939 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 130 |
| Conread position: | 177-812 |
| Cow position: | chr20:30684620-30684000 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 91 |
| Conread position: | 178-329 |
| Cow position: | chr20:21393892-21393738 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 178-369 |
| Cow position: | chr20:10845823-10846010 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 51, 156 |
| Conread position: | 178-566 |
| Cow position: | chr20:13679759-13680149 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 177 |
| Conread position: | 178-580 |
| Cow position: | chr20:25961402-25960997 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 181 |
| Conread position: | 178-600 |
| Cow position: | chr20:15947081-15947519 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 105 |
| Conread position: | 178-727 |
| Cow position: | chr20:22206835-22206290 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 80 |
| Conread position: | 178-795 |
| Cow position: | chr20:8313141-8313755 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 183 |
| Conread position: | 178-810 |
| Cow position: | chr20:19438239-19437628 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 51 |
| Conread position: | 178-812 |
| Cow position: | chr20:7116170-7116809 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 181 |
| Conread position: | 178-812 |
| Cow position: | chr20:15065064-15064426 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 81 |
| Conread position: | 178-812 |
| Cow position: | chr20:18315308-18315918 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 93 |
| Conread position: | 178-812 |
| Cow position: | chr20:20904915-20905520 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 21 |
| Conread position: | 178-812 |
| Cow position: | chr20:24614834-24614211 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 184 |
| Conread position: | 179-812 |
| Cow position: | chr20:3251837-3252478 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 89 |
| Conread position: | 180-573 |
| Cow position: | chr20:3033358-3032965 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 179 |
| Conread position: | 180-812 |
| Cow position: | chr20:5484487-5483855 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 180 |
| Conread position: | 183-288 |
| Cow position: | chr20:19495277-19495170 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 183-516 |
| Cow position: | chr20:3684194-3684524 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 176 |
| Conread position: | 183-692 |
| Cow position: | chr20:13664922-13665408 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 23 |
| Conread position: | 183-809 |
| Cow position: | chr20:5560421-5561051 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 178 |
| Conread position: | 183-810 |
| Cow position: | chr20:823061-822421 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 176 |
| Conread position: | 185-410 |
| Cow position: | chr20:10856745-10856966 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 69 |
| Conread position: | 197-803 |
| Cow position: | chr20:9953706-9954283 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 117 |
| Conread position: | 197-812 |
| Cow position: | chr20:31378608-31379210 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 122 |
| Conread position: | 203-454 |
| Cow position: | chr20:8993372-8993622 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 24, 47 |
| Conread position: | 283-707 |
| Cow position: | chr20:11678918-11679343 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 76 |
| Conread position: | 342-812 |
| Cow position: | chr20:21393697-21393234 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 19 |
| Conread position: | 368-812 |
| Cow position: | chr20:22717586-22718018 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 14, 32 |
| Conread position: | 370-812 |
| Cow position: | chr20:29572087-29572525 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 40 |
| Conread position: | 376-803 |
| Cow position: | chr20:10102460-10102875 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 23 |
| Conread position: | 377-698 |
| Cow position: | chr20:35973311-35973636 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 157, 27 |
| Conread position: | 378-812 |
| Cow position: | chr20:4799554-4799983 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 21 |
| Conread position: | 409-812 |
| Cow position: | chr20:10846010-10846414 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 81 |
| Conread position: | 441-728 |
| Cow position: | chr20:19192093-19192383 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 48 |
| Conread position: | 446-674 |
| Cow position: | chr20:24390394-24390173 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 186, 43 |
| Conread position: | 449-812 |
| Cow position: | chr20:28593772-28593412 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 9 |
| Conread position: | 491-734 |
| Cow position: | chr20:35119310-35119064 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 70 |
| Conread position: | 563-790 |
| Cow position: | chr20:11276385-11276605 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 92, 62 |
| Conread position: | 564-812 |
| Cow position: | chr20:3032839-3032599 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 161, 64 |
| Conread position: | 615-812 |
| Cow position: | chr20:8004653-8004852 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 644-812 |
| Cow position: | chr20:29948016-29947847 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 679-812 |
| Cow position: | chr20:15291843-15291709 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 47, 0 |
Show alignments to all cow chromosomes.