Cow genome map
| Conread name: | Tra1-TCH01C040031 |
| Conread position: | 171-330 |
| Cow position: | chr21:33251930-33251770 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 171-608 |
| Cow position: | chr21:27282810-27282372 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 157 |
| Conread position: | 176-391 |
| Cow position: | chr21:35144176-35143971 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 202, 52 |
| Conread position: | 176-468 |
| Cow position: | chr21:1191583-1191291 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 183 |
| Conread position: | 176-810 |
| Cow position: | chr21:30599506-30600132 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 138 |
| Conread position: | 176-811 |
| Cow position: | chr21:146342-145701 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 97 |
| Conread position: | 176-812 |
| Cow position: | chr21:10567088-10566459 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 87 |
| Conread position: | 176-812 |
| Cow position: | chr21:10850499-10849860 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 92 |
| Conread position: | 176-812 |
| Cow position: | chr21:30562222-30561582 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 187 |
| Conread position: | 176-812 |
| Cow position: | chr21:48116521-48115888 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 183 |
| Conread position: | 177-493 |
| Cow position: | chr21:18820011-18820313 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 62 |
| Conread position: | 177-812 |
| Cow position: | chr21:2883330-2883954 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 14 |
| Conread position: | 177-812 |
| Cow position: | chr21:3779185-3778548 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 182 |
| Conread position: | 177-812 |
| Cow position: | chr21:31559237-31559867 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 152 |
| Conread position: | 178-301 |
| Cow position: | chr21:2716300-2716425 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 178-318 |
| Cow position: | chr21:9870164-9870022 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 178-330 |
| Cow position: | chr21:34258571-34258726 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 178-407 |
| Cow position: | chr21:30226437-30226206 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 178-474 |
| Cow position: | chr21:2502308-2502015 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 44, 122 |
| Conread position: | 178-540 |
| Cow position: | chr21:3797953-3798314 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 181 |
| Conread position: | 178-637 |
| Cow position: | chr21:21914702-21914241 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 178-638 |
| Cow position: | chr21:23812293-23811831 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 181 |
| Conread position: | 178-704 |
| Cow position: | chr21:4457244-4456721 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 181 |
| Conread position: | 178-728 |
| Cow position: | chr21:20744351-20744883 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 46 |
| Conread position: | 178-803 |
| Cow position: | chr21:2476123-2476721 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 70 |
| Conread position: | 178-804 |
| Cow position: | chr21:36715046-36714428 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 76 |
| Conread position: | 178-809 |
| Cow position: | chr21:46916006-46915375 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 181 |
| Conread position: | 178-810 |
| Cow position: | chr21:11506014-11505369 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 194 |
| Conread position: | 178-810 |
| Cow position: | chr21:12055583-12056215 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 181 |
| Conread position: | 178-810 |
| Cow position: | chr21:26638047-26638674 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 185 |
| Conread position: | 178-810 |
| Cow position: | chr21:39425481-39424852 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 183 |
| Conread position: | 178-811 |
| Cow position: | chr21:4183935-4183324 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 34 |
| Conread position: | 178-812 |
| Cow position: | chr21:359451-358801 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 125 |
| Conread position: | 178-812 |
| Cow position: | chr21:1291773-1292392 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 185 |
| Conread position: | 178-812 |
| Cow position: | chr21:2416636-2416028 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 35 |
| Conread position: | 178-812 |
| Cow position: | chr21:2529710-2530346 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 85 |
| Conread position: | 178-812 |
| Cow position: | chr21:2674194-2674857 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 93 |
| Conread position: | 178-812 |
| Cow position: | chr21:2788575-2789201 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 178-812 |
| Cow position: | chr21:3615729-3615074 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 77 |
| Conread position: | 178-812 |
| Cow position: | chr21:4077255-4076627 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 77 |
| Conread position: | 178-812 |
| Cow position: | chr21:4091067-4090430 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 185 |
| Conread position: | 178-812 |
| Cow position: | chr21:6699165-6699781 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 73 |
| Conread position: | 178-812 |
| Cow position: | chr21:7267119-7267752 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 193 |
| Conread position: | 178-812 |
| Cow position: | chr21:13123588-13124216 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 142 |
| Conread position: | 178-812 |
| Cow position: | chr21:23861196-23860563 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 64 |
| Conread position: | 178-812 |
| Cow position: | chr21:34293433-34292799 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 59 |
| Conread position: | 179-632 |
| Cow position: | chr21:4589574-4590029 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 180 |
| Conread position: | 179-663 |
| Cow position: | chr21:26822817-26823297 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 319 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 48, 84 |
| Conread position: | 180-532 |
| Cow position: | chr21:40271261-40271613 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 179 |
| Conread position: | 182-793 |
| Cow position: | chr21:2511065-2510454 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 177 |
| Conread position: | 183-418 |
| Cow position: | chr21:26650454-26650218 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 176 |
| Conread position: | 183-601 |
| Cow position: | chr21:6339979-6339558 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 178 |
| Conread position: | 183-728 |
| Cow position: | chr21:2541000-2541552 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 72 |
| Conread position: | 183-803 |
| Cow position: | chr21:37045323-37044708 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 176 |
| Conread position: | 183-809 |
| Cow position: | chr21:11453243-11453870 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 176 |
| Conread position: | 184-812 |
| Cow position: | chr21:35596778-35596161 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 71 |
| Conread position: | 199-810 |
| Cow position: | chr21:47948505-47947898 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 81 |
| Conread position: | 199-812 |
| Cow position: | chr21:9892000-9891393 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 171 |
| Conread position: | 209-811 |
| Cow position: | chr21:25992231-25992837 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 407 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 14, 169 |
| Conread position: | 209-812 |
| Cow position: | chr21:992642-993243 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 390 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 20, 150 |
| Conread position: | 221-812 |
| Cow position: | chr21:3426858-3426266 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 32 |
| Conread position: | 221-812 |
| Cow position: | chr21:47939844-47939259 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 72 |
| Conread position: | 226-811 |
| Cow position: | chr21:216657-216094 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 374 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 26, 99 |
| Conread position: | 234-812 |
| Cow position: | chr21:4222333-4222915 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 56 |
| Conread position: | 247-601 |
| Cow position: | chr21:8678013-8678368 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 110 |
| Conread position: | 252-640 |
| Cow position: | chr21:33755643-33755261 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 59 |
| Conread position: | 263-468 |
| Cow position: | chr21:37147840-37147628 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 48, 96 |
| Conread position: | 312-810 |
| Cow position: | chr21:2769179-2769671 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 49 |
| Conread position: | 318-812 |
| Cow position: | chr21:34258954-34259432 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 41 |
| Conread position: | 335-812 |
| Cow position: | chr21:33251651-33251172 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 26 |
| Conread position: | 342-812 |
| Cow position: | chr21:2716430-2716889 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 17 |
| Conread position: | 366-809 |
| Cow position: | chr21:26818792-26819230 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 393-809 |
| Cow position: | chr21:27708964-27708545 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 6 |
| Conread position: | 400-812 |
| Cow position: | chr21:21517385-21516990 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 259 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 429-812 |
| Cow position: | chr21:1191214-1190822 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 60 |
| Conread position: | 463-790 |
| Cow position: | chr21:17573053-17572726 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 26 |
| Conread position: | 486-727 |
| Cow position: | chr21:27853-27623 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 48, 69 |
| Conread position: | 503-812 |
| Cow position: | chr21:2502020-2501717 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 7 |
| Conread position: | 513-810 |
| Cow position: | chr21:28529461-28529760 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 130 |
| Conread position: | 535-812 |
| Cow position: | chr21:40271762-40272030 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 191, 92 |
| Conread position: | 585-810 |
| Cow position: | chr21:5016020-5016248 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 629-810 |
| Cow position: | chr21:4590003-4590177 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
Show alignments to all cow chromosomes.