Cow genome map
| Conread name: | Tra1-TCH01C040031 |
| Conread position: | 173-812 |
| Cow position: | chr23:2026869-2027518 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 190 |
| Conread position: | 175-716 |
| Cow position: | chr23:15177319-15176779 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 176-504 |
| Cow position: | chr23:2716635-2716309 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 187 |
| Conread position: | 176-641 |
| Cow position: | chr23:14965505-14965967 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 183 |
| Conread position: | 176-702 |
| Cow position: | chr23:4888920-4888399 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 137 |
| Conread position: | 176-705 |
| Cow position: | chr23:2757841-2757296 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 183 |
| Conread position: | 176-726 |
| Cow position: | chr23:4752233-4751709 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 23 |
| Conread position: | 176-808 |
| Cow position: | chr23:27399750-27399114 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 68 |
| Conread position: | 176-812 |
| Cow position: | chr23:967103-967740 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 176-812 |
| Cow position: | chr23:2795321-2795954 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 20 |
| Conread position: | 176-812 |
| Cow position: | chr23:3881458-3882087 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 183 |
| Conread position: | 176-812 |
| Cow position: | chr23:4640377-4641017 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 187 |
| Conread position: | 176-812 |
| Cow position: | chr23:11778735-11778095 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 136 |
| Conread position: | 176-812 |
| Cow position: | chr23:15219644-15220285 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 188 |
| Conread position: | 176-812 |
| Cow position: | chr23:19489789-19489148 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 181 |
| Conread position: | 176-812 |
| Cow position: | chr23:30636054-30636694 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 176-812 |
| Cow position: | chr23:36031126-36031762 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 183 |
| Conread position: | 177-810 |
| Cow position: | chr23:15525856-15525223 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 182 |
| Conread position: | 177-810 |
| Cow position: | chr23:22147008-22147649 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 17 |
| Conread position: | 177-812 |
| Cow position: | chr23:28913641-28913020 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 17 |
| Conread position: | 178-372 |
| Cow position: | chr23:2765208-2765403 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 44, 181 |
| Conread position: | 178-372 |
| Cow position: | chr23:22875441-22875623 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 178-395 |
| Cow position: | chr23:16615754-16615970 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 142, 99 |
| Conread position: | 178-430 |
| Cow position: | chr23:8980076-8980318 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 44, 128 |
| Conread position: | 178-477 |
| Cow position: | chr23:2574780-2574481 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 73 |
| Conread position: | 178-526 |
| Cow position: | chr23:10903782-10903430 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 238 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 13, 188 |
| Conread position: | 178-532 |
| Cow position: | chr23:1327229-1327569 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 179 |
| Conread position: | 178-549 |
| Cow position: | chr23:29474318-29474682 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 48 |
| Conread position: | 178-553 |
| Cow position: | chr23:7046810-7047193 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 36, 70 |
| Conread position: | 178-557 |
| Cow position: | chr23:31591557-31591945 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 182 |
| Conread position: | 178-611 |
| Cow position: | chr23:6216816-6216384 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 297 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 178-612 |
| Cow position: | chr23:38578519-38578100 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 7 |
| Conread position: | 178-650 |
| Cow position: | chr23:14974318-14974794 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 154 |
| Conread position: | 178-727 |
| Cow position: | chr23:16616601-16617157 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 188 |
| Conread position: | 178-728 |
| Cow position: | chr23:2312995-2313546 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 118 |
| Conread position: | 178-804 |
| Cow position: | chr23:19332164-19332785 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 61 |
| Conread position: | 178-806 |
| Cow position: | chr23:4360075-4359450 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 185 |
| Conread position: | 178-809 |
| Cow position: | chr23:28217535-28216902 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 185 |
| Conread position: | 178-810 |
| Cow position: | chr23:4434701-4434081 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 61 |
| Conread position: | 178-810 |
| Cow position: | chr23:19950338-19950975 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 185 |
| Conread position: | 178-810 |
| Cow position: | chr23:20302457-20301821 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 18 |
| Conread position: | 178-812 |
| Cow position: | chr23:988403-989033 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 117 |
| Conread position: | 178-812 |
| Cow position: | chr23:4277200-4276566 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 182 |
| Conread position: | 178-812 |
| Cow position: | chr23:5778842-5779478 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 183 |
| Conread position: | 178-812 |
| Cow position: | chr23:7273876-7273269 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 157 |
| Conread position: | 180-357 |
| Cow position: | chr23:29452075-29452256 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 180-599 |
| Cow position: | chr23:25683821-25684237 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 183-477 |
| Cow position: | chr23:31594996-31595292 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 176 |
| Conread position: | 183-809 |
| Cow position: | chr23:31447055-31446425 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 178 |
| Conread position: | 184-660 |
| Cow position: | chr23:20155976-20156469 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 177 |
| Conread position: | 198-493 |
| Cow position: | chr23:2763548-2763831 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 112, 11 |
| Conread position: | 200-667 |
| Cow position: | chr23:2523974-2524442 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 159 |
| Conread position: | 200-812 |
| Cow position: | chr23:5874559-5875164 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 38 |
| Conread position: | 201-733 |
| Cow position: | chr23:34175400-34174873 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 102 |
| Conread position: | 207-809 |
| Cow position: | chr23:13509269-13508683 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 387 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 6, 94 |
| Conread position: | 221-812 |
| Cow position: | chr23:1024864-1025442 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 21 |
| Conread position: | 221-812 |
| Cow position: | chr23:3013846-3013239 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 134 |
| Conread position: | 245-812 |
| Cow position: | chr23:4816251-4815682 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 116 |
| Conread position: | 370-812 |
| Cow position: | chr23:16481310-16481743 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 89 |
| Conread position: | 408-811 |
| Cow position: | chr23:4510113-4509715 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 31 |
| Conread position: | 420-811 |
| Cow position: | chr23:22875632-22876017 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 19 |
| Conread position: | 422-695 |
| Cow position: | chr23:7750393-7750118 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 440-812 |
| Cow position: | chr23:19017676-19017317 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 94, 14 |
| Conread position: | 455-787 |
| Cow position: | chr23:8980525-8980856 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 34 |
| Conread position: | 491-812 |
| Cow position: | chr23:2765449-2765760 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 38 |
| Conread position: | 502-812 |
| Cow position: | chr23:2574486-2574173 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 32, 88 |
| Conread position: | 507-812 |
| Cow position: | chr23:2716263-2715959 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 27, 5 |
| Conread position: | 533-724 |
| Cow position: | chr23:16615981-16616168 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 533-777 |
| Cow position: | chr23:2725744-2725505 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 534-812 |
| Cow position: | chr23:1330403-1330678 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 94 |
| Conread position: | 534-812 |
| Cow position: | chr23:31595291-31595575 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 174 |
| Conread position: | 536-812 |
| Cow position: | chr23:1141437-1141177 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 632-810 |
| Cow position: | chr23:14966184-14966363 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 633-810 |
| Cow position: | chr23:14974981-14975152 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 641-795 |
| Cow position: | chr23:6469495-6469650 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 81, 0 |
Show alignments to all cow chromosomes.