Cow genome map


           Conread name:
           Tra1-TCH01C040031
        

               Conread position:
               173-812
               

               Cow position:
               
               

               Alignm length:
               657
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 190
               

               Conread position:
               175-716
               

               Cow position:
               
               

               Alignm length:
               548
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 34
               

               Conread position:
               176-504
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 187
               

               Conread position:
               176-641
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 183
               

               Conread position:
               176-702
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 137
               

               Conread position:
               176-705
               

               Cow position:
               
               

               Alignm length:
               551
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 183
               

               Conread position:
               176-726
               

               Cow position:
               
               

               Alignm length:
               556
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 23
               

               Conread position:
               176-808
               

               Cow position:
               
               

               Alignm length:
               641
               

               Alignm identity:
               463
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 68
               

               Conread position:
               176-812
               

               Cow position:
               
               

               Alignm length:
               646
               

               Alignm identity:
               459
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 144
               

               Conread position:
               176-812
               

               Cow position:
               
               

               Alignm length:
               643
               

               Alignm identity:
               476
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 20
               

               Conread position:
               176-812
               

               Cow position:
               
               

               Alignm length:
               644
               

               Alignm identity:
               470
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 183
               

               Conread position:
               176-812
               

               Cow position:
               
               

               Alignm length:
               645
               

               Alignm identity:
               471
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 187
               

               Conread position:
               176-812
               

               Cow position:
               
               

               Alignm length:
               659
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 136
               

               Conread position:
               176-812
               

               Cow position:
               
               

               Alignm length:
               653
               

               Alignm identity:
               461
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 188
               

               Conread position:
               176-812
               

               Cow position:
               
               

               Alignm length:
               648
               

               Alignm identity:
               471
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 181
               

               Conread position:
               176-812
               

               Cow position:
               
               

               Alignm length:
               645
               

               Alignm identity:
               474
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 162
               

               Conread position:
               176-812
               

               Cow position:
               
               

               Alignm length:
               644
               

               Alignm identity:
               480
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 183
               

               Conread position:
               177-810
               

               Cow position:
               
               

               Alignm length:
               641
               

               Alignm identity:
               464
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 182
               

               Conread position:
               177-810
               

               Cow position:
               
               

               Alignm length:
               649
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 17
               

               Conread position:
               177-812
               

               Cow position:
               
               

               Alignm length:
               641
               

               Alignm identity:
               458
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 17
               

               Conread position:
               178-372
               

               Cow position:
               
               

               Alignm length:
               197
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               44, 181
               

               Conread position:
               178-372
               

               Cow position:
               
               

               Alignm length:
               195
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               178-395
               

               Cow position:
               
               

               Alignm length:
               220
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               142, 99
               

               Conread position:
               178-430
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               44, 128
               

               Conread position:
               178-477
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 73
               

               Conread position:
               178-526
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               238
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               13, 188
               

               Conread position:
               178-532
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 179
               

               Conread position:
               178-549
               

               Cow position:
               
               

               Alignm length:
               377
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 48
               

               Conread position:
               178-553
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               258
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               36, 70
               

               Conread position:
               178-557
               

               Cow position:
               
               

               Alignm length:
               394
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 182
               

               Conread position:
               178-611
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               297
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               35, 16
               

               Conread position:
               178-612
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 7
               

               Conread position:
               178-650
               

               Cow position:
               
               

               Alignm length:
               483
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 154
               

               Conread position:
               178-727
               

               Cow position:
               
               

               Alignm length:
               561
               

               Alignm identity:
               417
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 188
               

               Conread position:
               178-728
               

               Cow position:
               
               

               Alignm length:
               558
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 118
               

               Conread position:
               178-804
               

               Cow position:
               
               

               Alignm length:
               637
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 61
               

               Conread position:
               178-806
               

               Cow position:
               
               

               Alignm length:
               635
               

               Alignm identity:
               472
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 185
               

               Conread position:
               178-809
               

               Cow position:
               
               

               Alignm length:
               639
               

               Alignm identity:
               479
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 185
               

               Conread position:
               178-810
               

               Cow position:
               
               

               Alignm length:
               637
               

               Alignm identity:
               455
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 61
               

               Conread position:
               178-810
               

               Cow position:
               
               

               Alignm length:
               643
               

               Alignm identity:
               468
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 185
               

               Conread position:
               178-810
               

               Cow position:
               
               

               Alignm length:
               643
               

               Alignm identity:
               467
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 18
               

               Conread position:
               178-812
               

               Cow position:
               
               

               Alignm length:
               643
               

               Alignm identity:
               471
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 117
               

               Conread position:
               178-812
               

               Cow position:
               
               

               Alignm length:
               643
               

               Alignm identity:
               488
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 182
               

               Conread position:
               178-812
               

               Cow position:
               
               

               Alignm length:
               641
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 183
               

               Conread position:
               178-812
               

               Cow position:
               
               

               Alignm length:
               643
               

               Alignm identity:
               481
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 157
               

               Conread position:
               180-357
               

               Cow position:
               
               

               Alignm length:
               182
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               180-599
               

               Cow position:
               
               

               Alignm length:
               432
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 19
               

               Conread position:
               183-477
               

               Cow position:
               
               

               Alignm length:
               299
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 176
               

               Conread position:
               183-809
               

               Cow position:
               
               

               Alignm length:
               635
               

               Alignm identity:
               470
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 178
               

               Conread position:
               184-660
               

               Cow position:
               
               

               Alignm length:
               501
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 177
               

               Conread position:
               198-493
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               112, 11
               

               Conread position:
               200-667
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 159
               

               Conread position:
               200-812
               

               Cow position:
               
               

               Alignm length:
               621
               

               Alignm identity:
               461
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 38
               

               Conread position:
               201-733
               

               Cow position:
               
               

               Alignm length:
               538
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 102
               

               Conread position:
               207-809
               

               Cow position:
               
               

               Alignm length:
               611
               

               Alignm identity:
               387
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               6, 94
               

               Conread position:
               221-812
               

               Cow position:
               
               

               Alignm length:
               598
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 21
               

               Conread position:
               221-812
               

               Cow position:
               
               

               Alignm length:
               615
               

               Alignm identity:
               450
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 134
               

               Conread position:
               245-812
               

               Cow position:
               
               

               Alignm length:
               575
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 116
               

               Conread position:
               370-812
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 89
               

               Conread position:
               408-811
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 31
               

               Conread position:
               420-811
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 19
               

               Conread position:
               422-695
               

               Cow position:
               
               

               Alignm length:
               276
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               440-812
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               256
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               94, 14
               

               Conread position:
               455-787
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 34
               

               Conread position:
               491-812
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 38
               

               Conread position:
               502-812
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               219
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               32, 88
               

               Conread position:
               507-812
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               220
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               27, 5
               

               Conread position:
               533-724
               

               Cow position:
               
               

               Alignm length:
               192
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               533-777
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               534-812
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 94
               

               Conread position:
               534-812
               

               Cow position:
               
               

               Alignm length:
               286
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 174
               

               Conread position:
               536-812
               

               Cow position:
               
               

               Alignm length:
               277
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               632-810
               

               Cow position:
               
               

               Alignm length:
               180
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               633-810
               

               Cow position:
               
               

               Alignm length:
               178
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               641-795
               

               Cow position:
               
               

               Alignm length:
               156
               

               Alignm identity:
               117
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               81, 0
               
Show alignments to all cow chromosomes.