Cow genome map
| Conread name: | Tra1-TCH01C040031 |
| Conread position: | 171-810 |
| Cow position: | chr24:14384277-14384914 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 143 |
| Conread position: | 176-456 |
| Cow position: | chr24:29187616-29187335 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 183 |
| Conread position: | 176-518 |
| Cow position: | chr24:17696645-17696976 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 68 |
| Conread position: | 176-641 |
| Cow position: | chr24:12335442-12335927 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 176-812 |
| Cow position: | chr24:148286-148898 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 183 |
| Conread position: | 176-812 |
| Cow position: | chr24:4415197-4415838 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 9 |
| Conread position: | 176-812 |
| Cow position: | chr24:12086531-12085893 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 183 |
| Conread position: | 176-812 |
| Cow position: | chr24:19833718-19833077 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 183 |
| Conread position: | 177-810 |
| Cow position: | chr24:33933698-33933063 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 186 |
| Conread position: | 178-288 |
| Cow position: | chr24:43814095-43813983 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 178-330 |
| Cow position: | chr24:16376851-16376701 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 68, 51 |
| Conread position: | 178-336 |
| Cow position: | chr24:5992898-5993058 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 178-362 |
| Cow position: | chr24:7061720-7061534 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 148 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 178-376 |
| Cow position: | chr24:6646034-6645837 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 44, 148 |
| Conread position: | 178-613 |
| Cow position: | chr24:40654715-40654282 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 21, 77 |
| Conread position: | 178-651 |
| Cow position: | chr24:6514721-6515188 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 304 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 201, 49 |
| Conread position: | 178-656 |
| Cow position: | chr24:9091954-9092423 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 88 |
| Conread position: | 178-674 |
| Cow position: | chr24:14585407-14584927 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 185 |
| Conread position: | 178-713 |
| Cow position: | chr24:16084328-16084867 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 186 |
| Conread position: | 178-766 |
| Cow position: | chr24:8030482-8029890 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 185 |
| Conread position: | 178-806 |
| Cow position: | chr24:33739009-33739643 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 90 |
| Conread position: | 178-809 |
| Cow position: | chr24:16648986-16649597 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 182 |
| Conread position: | 178-809 |
| Cow position: | chr24:22793503-22792873 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 181 |
| Conread position: | 178-810 |
| Cow position: | chr24:6024767-6025401 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 68 |
| Conread position: | 178-810 |
| Cow position: | chr24:6084348-6083712 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 185 |
| Conread position: | 178-810 |
| Cow position: | chr24:6434571-6433933 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 182 |
| Conread position: | 178-810 |
| Cow position: | chr24:9188401-9189035 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 184 |
| Conread position: | 178-811 |
| Cow position: | chr24:35841292-35841908 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 103 |
| Conread position: | 178-812 |
| Cow position: | chr24:1447885-1447273 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 85 |
| Conread position: | 178-812 |
| Cow position: | chr24:12237384-12236755 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 7 |
| Conread position: | 178-812 |
| Cow position: | chr24:12568555-12567949 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 48 |
| Conread position: | 178-812 |
| Cow position: | chr24:35838289-35838933 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 87 |
| Conread position: | 178-812 |
| Cow position: | chr24:36559756-36560378 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 181 |
| Conread position: | 178-812 |
| Cow position: | chr24:36708177-36707554 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 142 |
| Conread position: | 179-812 |
| Cow position: | chr24:6336012-6335391 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 59 |
| Conread position: | 180-553 |
| Cow position: | chr24:6660270-6660655 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 193 |
| Conread position: | 180-812 |
| Cow position: | chr24:6145697-6145053 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 140 |
| Conread position: | 181-590 |
| Cow position: | chr24:37217327-37216920 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 58 |
| Conread position: | 183-492 |
| Cow position: | chr24:7091268-7091580 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 46, 56 |
| Conread position: | 183-623 |
| Cow position: | chr24:40549200-40548760 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 176 |
| Conread position: | 183-812 |
| Cow position: | chr24:12484991-12485624 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 180 |
| Conread position: | 184-810 |
| Cow position: | chr24:12113722-12114335 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 84 |
| Conread position: | 184-812 |
| Cow position: | chr24:6352509-6351886 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 49 |
| Conread position: | 184-812 |
| Cow position: | chr24:12797443-12798057 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 179 |
| Conread position: | 185-786 |
| Cow position: | chr24:6537861-6537281 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 42 |
| Conread position: | 185-789 |
| Cow position: | chr24:32331639-32331062 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 68 |
| Conread position: | 185-810 |
| Cow position: | chr24:13188497-13187890 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 82 |
| Conread position: | 186-812 |
| Cow position: | chr24:15392017-15392603 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 69 |
| Conread position: | 188-809 |
| Cow position: | chr24:44017867-44017242 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 173 |
| Conread position: | 191-443 |
| Cow position: | chr24:1437870-1438118 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 36, 103 |
| Conread position: | 221-503 |
| Cow position: | chr24:13524390-13524126 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 158, 132 |
| Conread position: | 221-656 |
| Cow position: | chr24:22952422-22951986 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 136 |
| Conread position: | 261-812 |
| Cow position: | chr24:12131240-12131788 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 100 |
| Conread position: | 267-810 |
| Cow position: | chr24:12162115-12161574 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 24 |
| Conread position: | 287-807 |
| Cow position: | chr24:14390511-14391023 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 78 |
| Conread position: | 289-812 |
| Cow position: | chr24:39678627-39678138 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 72 |
| Conread position: | 290-732 |
| Cow position: | chr24:12224245-12224706 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 292-812 |
| Cow position: | chr24:38635969-38635441 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 65 |
| Conread position: | 343-810 |
| Cow position: | chr24:7061264-7060802 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 343-812 |
| Cow position: | chr24:17187704-17187239 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 350-783 |
| Cow position: | chr24:2636275-2635842 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 350-810 |
| Cow position: | chr24:6645570-6645113 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 9 |
| Conread position: | 378-623 |
| Cow position: | chr24:35987228-35987464 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 156, 21 |
| Conread position: | 403-812 |
| Cow position: | chr24:13531431-13531841 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 82 |
| Conread position: | 409-812 |
| Cow position: | chr24:12288630-12289025 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 76 |
| Conread position: | 449-812 |
| Cow position: | chr24:13181293-13181643 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 258 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 87, 6 |
| Conread position: | 471-809 |
| Cow position: | chr24:13021705-13021368 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 514-812 |
| Cow position: | chr24:12208127-12207836 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 20, 42 |
| Conread position: | 584-812 |
| Cow position: | chr24:37301159-37301380 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 96, 44 |
| Conread position: | 588-809 |
| Cow position: | chr24:20268136-20267914 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 133, 155 |
| Conread position: | 588-812 |
| Cow position: | chr24:37216651-37216420 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 599-810 |
| Cow position: | chr24:5993070-5993275 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 182, 28 |
| Conread position: | 646-812 |
| Cow position: | chr24:29186666-29186499 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 678-812 |
| Cow position: | chr24:17314485-17314620 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
Show alignments to all cow chromosomes.