Cow genome map
| Conread name: | Tra1-TCH01C040031 |
| Conread position: | 176-418 |
| Cow position: | chr25:34014199-34014443 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 46, 103 |
| Conread position: | 176-611 |
| Cow position: | chr25:12942411-12942849 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 183 |
| Conread position: | 176-790 |
| Cow position: | chr25:18275539-18276151 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 192 |
| Conread position: | 176-810 |
| Cow position: | chr25:34346728-34347339 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 187 |
| Conread position: | 176-812 |
| Cow position: | chr25:8675205-8674577 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 187 |
| Conread position: | 176-812 |
| Cow position: | chr25:13781319-13780686 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 183 |
| Conread position: | 176-812 |
| Cow position: | chr25:18889726-18890364 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 188 |
| Conread position: | 176-812 |
| Cow position: | chr25:22147784-22147146 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 187 |
| Conread position: | 176-812 |
| Cow position: | chr25:25506938-25506300 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 117 |
| Conread position: | 176-812 |
| Cow position: | chr25:26279548-26278926 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 189 |
| Conread position: | 178-429 |
| Cow position: | chr25:9544348-9544100 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 105 |
| Conread position: | 178-434 |
| Cow position: | chr25:18303687-18303431 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 44, 77 |
| Conread position: | 178-497 |
| Cow position: | chr25:18194811-18195130 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 181 |
| Conread position: | 178-532 |
| Cow position: | chr25:27022279-27022633 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 181 |
| Conread position: | 178-561 |
| Cow position: | chr25:33665586-33665967 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 177 |
| Conread position: | 178-804 |
| Cow position: | chr25:11933244-11933859 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 61 |
| Conread position: | 178-809 |
| Cow position: | chr25:18255085-18255704 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 76 |
| Conread position: | 178-809 |
| Cow position: | chr25:35362142-35362766 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 181 |
| Conread position: | 178-810 |
| Cow position: | chr25:19917371-19916741 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 181 |
| Conread position: | 178-810 |
| Cow position: | chr25:20776615-20777246 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 81 |
| Conread position: | 178-810 |
| Cow position: | chr25:32580252-32579635 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 77 |
| Conread position: | 178-811 |
| Cow position: | chr25:19288059-19288693 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 412 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 49, 76 |
| Conread position: | 178-812 |
| Cow position: | chr25:11375061-11375696 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 183 |
| Conread position: | 178-812 |
| Cow position: | chr25:12759313-12759948 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 21 |
| Conread position: | 178-812 |
| Cow position: | chr25:14016452-14015827 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 113 |
| Conread position: | 178-812 |
| Cow position: | chr25:17468415-17469043 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 13 |
| Conread position: | 178-812 |
| Cow position: | chr25:18060315-18060943 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 106 |
| Conread position: | 178-812 |
| Cow position: | chr25:34656159-34656795 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 179 |
| Conread position: | 183-302 |
| Cow position: | chr25:17560350-17560471 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 183-307 |
| Cow position: | chr25:6172185-6172059 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 183-734 |
| Cow position: | chr25:36240831-36240276 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 41 |
| Conread position: | 183-806 |
| Cow position: | chr25:26922498-26921887 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 11 |
| Conread position: | 183-812 |
| Cow position: | chr25:18093292-18092673 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 143 |
| Conread position: | 184-809 |
| Cow position: | chr25:17589273-17589890 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 149 |
| Conread position: | 196-574 |
| Cow position: | chr25:23345068-23345451 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 62 |
| Conread position: | 197-812 |
| Cow position: | chr25:20629834-20629227 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 31 |
| Conread position: | 205-790 |
| Cow position: | chr25:33244080-33243530 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 389 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 24, 116 |
| Conread position: | 211-812 |
| Cow position: | chr25:18027371-18027978 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 150 |
| Conread position: | 221-809 |
| Cow position: | chr25:20494591-20494014 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 29 |
| Conread position: | 273-508 |
| Cow position: | chr25:18421857-18421626 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 105, 80 |
| Conread position: | 302-757 |
| Cow position: | chr25:33990898-33991350 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 59 |
| Conread position: | 328-812 |
| Cow position: | chr25:17560469-17560944 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 34 |
| Conread position: | 398-662 |
| Cow position: | chr25:18173429-18173161 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 91 |
| Conread position: | 407-812 |
| Cow position: | chr25:26867270-26866873 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 73 |
| Conread position: | 433-812 |
| Cow position: | chr25:18302821-18302424 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 5 |
| Conread position: | 459-812 |
| Cow position: | chr25:18411283-18411631 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 27 |
| Conread position: | 460-809 |
| Cow position: | chr25:24172032-24171688 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 29 |
| Conread position: | 552-812 |
| Cow position: | chr25:34014435-34014695 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 174, 208 |
| Conread position: | 606-812 |
| Cow position: | chr25:12943583-12943787 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 120, 21 |
Show alignments to all cow chromosomes.