Cow genome map
Conread name: | Tra1-TCH01C040031 |
Conread position: | 173-812 |
Cow position: | chr29:38227240-38226613 (view UCSC Genome Browser custom track) |
Alignm length: | 655 |
Alignm identity: | 466 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 186 |
Conread position: | 176-455 |
Cow position: | chr29:410268-410548 (view UCSC Genome Browser custom track) |
Alignm length: | 283 |
Alignm identity: | 215 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 183 |
Conread position: | 176-554 |
Cow position: | chr29:45587103-45587469 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 173 |
Conread position: | 176-578 |
Cow position: | chr29:14586179-14585780 (view UCSC Genome Browser custom track) |
Alignm length: | 408 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 184 |
Conread position: | 176-783 |
Cow position: | chr29:34799550-34800159 (view UCSC Genome Browser custom track) |
Alignm length: | 617 |
Alignm identity: | 449 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 183 |
Conread position: | 176-810 |
Cow position: | chr29:45459973-45459339 (view UCSC Genome Browser custom track) |
Alignm length: | 645 |
Alignm identity: | 475 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 167 |
Conread position: | 176-812 |
Cow position: | chr29:48223-48858 (view UCSC Genome Browser custom track) |
Alignm length: | 641 |
Alignm identity: | 465 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 205, 185 |
Conread position: | 176-812 |
Cow position: | chr29:2100102-2099463 (view UCSC Genome Browser custom track) |
Alignm length: | 645 |
Alignm identity: | 481 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 187 |
Conread position: | 176-812 |
Cow position: | chr29:2690157-2689524 (view UCSC Genome Browser custom track) |
Alignm length: | 643 |
Alignm identity: | 469 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 71 |
Conread position: | 176-812 |
Cow position: | chr29:2841116-2841747 (view UCSC Genome Browser custom track) |
Alignm length: | 645 |
Alignm identity: | 478 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 158 |
Conread position: | 176-812 |
Cow position: | chr29:6266244-6266874 (view UCSC Genome Browser custom track) |
Alignm length: | 644 |
Alignm identity: | 473 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 187 |
Conread position: | 176-812 |
Cow position: | chr29:7430962-7431598 (view UCSC Genome Browser custom track) |
Alignm length: | 645 |
Alignm identity: | 476 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 29 |
Conread position: | 176-812 |
Cow position: | chr29:10647994-10648627 (view UCSC Genome Browser custom track) |
Alignm length: | 644 |
Alignm identity: | 468 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 183 |
Conread position: | 176-812 |
Cow position: | chr29:16022787-16022162 (view UCSC Genome Browser custom track) |
Alignm length: | 645 |
Alignm identity: | 464 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 183 |
Conread position: | 176-812 |
Cow position: | chr29:23976097-23975451 (view UCSC Genome Browser custom track) |
Alignm length: | 651 |
Alignm identity: | 463 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 183 |
Conread position: | 176-812 |
Cow position: | chr29:25932287-25932926 (view UCSC Genome Browser custom track) |
Alignm length: | 644 |
Alignm identity: | 475 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 187 |
Conread position: | 176-812 |
Cow position: | chr29:26164565-26165201 (view UCSC Genome Browser custom track) |
Alignm length: | 644 |
Alignm identity: | 472 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 187 |
Conread position: | 176-812 |
Cow position: | chr29:32540067-32539429 (view UCSC Genome Browser custom track) |
Alignm length: | 643 |
Alignm identity: | 484 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 174 |
Conread position: | 176-812 |
Cow position: | chr29:39079455-39080088 (view UCSC Genome Browser custom track) |
Alignm length: | 644 |
Alignm identity: | 469 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 187 |
Conread position: | 176-812 |
Cow position: | chr29:40502725-40503361 (view UCSC Genome Browser custom track) |
Alignm length: | 645 |
Alignm identity: | 469 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 79 |
Conread position: | 177-515 |
Cow position: | chr29:2466078-2466418 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 224 |
Conread position: | 177-812 |
Cow position: | chr29:10823713-10824338 (view UCSC Genome Browser custom track) |
Alignm length: | 645 |
Alignm identity: | 456 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 186 |
Conread position: | 177-812 |
Cow position: | chr29:19622991-19623626 (view UCSC Genome Browser custom track) |
Alignm length: | 643 |
Alignm identity: | 485 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 186 |
Conread position: | 177-812 |
Cow position: | chr29:19653364-19652726 (view UCSC Genome Browser custom track) |
Alignm length: | 645 |
Alignm identity: | 478 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 186 |
Conread position: | 177-812 |
Cow position: | chr29:43322811-43322177 (view UCSC Genome Browser custom track) |
Alignm length: | 643 |
Alignm identity: | 477 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 119 |
Conread position: | 178-340 |
Cow position: | chr29:21426775-21426933 (view UCSC Genome Browser custom track) |
Alignm length: | 163 |
Alignm identity: | 126 |
Alignm E-value: | 9e-30 |
Alignm gaps (pig, cow): | 31, 0 |
Conread position: | 178-355 |
Cow position: | chr29:31181670-31181492 (view UCSC Genome Browser custom track) |
Alignm length: | 180 |
Alignm identity: | 133 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 47, 156 |
Conread position: | 178-495 |
Cow position: | chr29:9643501-9643820 (view UCSC Genome Browser custom track) |
Alignm length: | 325 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 146 |
Conread position: | 178-503 |
Cow position: | chr29:803101-803421 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 227 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 49, 75 |
Conread position: | 178-530 |
Cow position: | chr29:18856689-18857041 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 181 |
Conread position: | 178-597 |
Cow position: | chr29:27980664-27981084 (view UCSC Genome Browser custom track) |
Alignm length: | 426 |
Alignm identity: | 318 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 22 |
Conread position: | 178-671 |
Cow position: | chr29:19885325-19884829 (view UCSC Genome Browser custom track) |
Alignm length: | 500 |
Alignm identity: | 338 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 181 |
Conread position: | 178-782 |
Cow position: | chr29:35297129-35296525 (view UCSC Genome Browser custom track) |
Alignm length: | 614 |
Alignm identity: | 448 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 156 |
Conread position: | 178-809 |
Cow position: | chr29:27250087-27250712 (view UCSC Genome Browser custom track) |
Alignm length: | 638 |
Alignm identity: | 472 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 151 |
Conread position: | 178-810 |
Cow position: | chr29:610357-610993 (view UCSC Genome Browser custom track) |
Alignm length: | 643 |
Alignm identity: | 466 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 181 |
Conread position: | 178-810 |
Cow position: | chr29:7841051-7840418 (view UCSC Genome Browser custom track) |
Alignm length: | 639 |
Alignm identity: | 463 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 125 |
Conread position: | 178-811 |
Cow position: | chr29:14013718-14013091 (view UCSC Genome Browser custom track) |
Alignm length: | 643 |
Alignm identity: | 413 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 10 |
Conread position: | 178-811 |
Cow position: | chr29:14072693-14073322 (view UCSC Genome Browser custom track) |
Alignm length: | 645 |
Alignm identity: | 415 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 10 |
Conread position: | 178-812 |
Cow position: | chr29:104819-104204 (view UCSC Genome Browser custom track) |
Alignm length: | 641 |
Alignm identity: | 461 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 16 |
Conread position: | 178-812 |
Cow position: | chr29:2750166-2750764 (view UCSC Genome Browser custom track) |
Alignm length: | 639 |
Alignm identity: | 455 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 84 |
Conread position: | 178-812 |
Cow position: | chr29:11049533-11048900 (view UCSC Genome Browser custom track) |
Alignm length: | 644 |
Alignm identity: | 486 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 153 |
Conread position: | 178-812 |
Cow position: | chr29:16770378-16769754 (view UCSC Genome Browser custom track) |
Alignm length: | 641 |
Alignm identity: | 473 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 183 |
Conread position: | 178-812 |
Cow position: | chr29:20251414-20250777 (view UCSC Genome Browser custom track) |
Alignm length: | 643 |
Alignm identity: | 466 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 105 |
Conread position: | 178-812 |
Cow position: | chr29:21543114-21543754 (view UCSC Genome Browser custom track) |
Alignm length: | 651 |
Alignm identity: | 481 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 172 |
Conread position: | 178-812 |
Cow position: | chr29:27040517-27041142 (view UCSC Genome Browser custom track) |
Alignm length: | 640 |
Alignm identity: | 470 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 201, 43 |
Conread position: | 178-812 |
Cow position: | chr29:35196919-35196305 (view UCSC Genome Browser custom track) |
Alignm length: | 642 |
Alignm identity: | 465 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 130 |
Conread position: | 178-812 |
Cow position: | chr29:43365747-43366373 (view UCSC Genome Browser custom track) |
Alignm length: | 651 |
Alignm identity: | 468 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 68 |
Conread position: | 179-810 |
Cow position: | chr29:5957858-5957223 (view UCSC Genome Browser custom track) |
Alignm length: | 640 |
Alignm identity: | 459 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 180 |
Conread position: | 181-625 |
Cow position: | chr29:22966008-22966445 (view UCSC Genome Browser custom track) |
Alignm length: | 449 |
Alignm identity: | 276 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 43, 73 |
Conread position: | 182-579 |
Cow position: | chr29:11841909-11841518 (view UCSC Genome Browser custom track) |
Alignm length: | 403 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 122, 48 |
Conread position: | 182-666 |
Cow position: | chr29:11855853-11855364 (view UCSC Genome Browser custom track) |
Alignm length: | 501 |
Alignm identity: | 326 |
Alignm E-value: | 3.00018e-42 |
Alignm gaps (pig, cow): | 77, 68 |
Conread position: | 182-812 |
Cow position: | chr29:15949940-15950558 (view UCSC Genome Browser custom track) |
Alignm length: | 638 |
Alignm identity: | 435 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 177 |
Conread position: | 183-288 |
Cow position: | chr29:15968611-15968718 (view UCSC Genome Browser custom track) |
Alignm length: | 108 |
Alignm identity: | 90 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 39, 0 |
Conread position: | 183-400 |
Cow position: | chr29:34925729-34925505 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 173 |
Alignm E-value: | 3.9937e-43 |
Alignm gaps (pig, cow): | 39, 0 |
Conread position: | 183-507 |
Cow position: | chr29:13582318-13581998 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 72 |
Conread position: | 183-809 |
Cow position: | chr29:15894600-15895227 (view UCSC Genome Browser custom track) |
Alignm length: | 635 |
Alignm identity: | 473 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 176 |
Conread position: | 184-560 |
Cow position: | chr29:669808-670185 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 152 |
Conread position: | 185-519 |
Cow position: | chr29:42650534-42650199 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 166 |
Conread position: | 185-519 |
Cow position: | chr29:42802394-42802059 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 166 |
Conread position: | 194-791 |
Cow position: | chr29:10847853-10848479 (view UCSC Genome Browser custom track) |
Alignm length: | 632 |
Alignm identity: | 465 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 223 |
Conread position: | 196-812 |
Cow position: | chr29:30811759-30811169 (view UCSC Genome Browser custom track) |
Alignm length: | 621 |
Alignm identity: | 436 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 185, 32 |
Conread position: | 200-811 |
Cow position: | chr29:1715474-1714879 (view UCSC Genome Browser custom track) |
Alignm length: | 616 |
Alignm identity: | 411 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 158 |
Conread position: | 218-810 |
Cow position: | chr29:32316256-32315662 (view UCSC Genome Browser custom track) |
Alignm length: | 601 |
Alignm identity: | 429 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 143 |
Conread position: | 221-654 |
Cow position: | chr29:8062688-8063124 (view UCSC Genome Browser custom track) |
Alignm length: | 449 |
Alignm identity: | 282 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 38, 29 |
Conread position: | 231-691 |
Cow position: | chr29:17663104-17662661 (view UCSC Genome Browser custom track) |
Alignm length: | 464 |
Alignm identity: | 324 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 126 |
Conread position: | 234-452 |
Cow position: | chr29:12796168-12796385 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 165 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 145, 123 |
Conread position: | 267-728 |
Cow position: | chr29:13852861-13853317 (view UCSC Genome Browser custom track) |
Alignm length: | 464 |
Alignm identity: | 340 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 112, 39 |
Conread position: | 270-807 |
Cow position: | chr29:4634815-4635338 (view UCSC Genome Browser custom track) |
Alignm length: | 544 |
Alignm identity: | 337 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 150, 50 |
Conread position: | 271-802 |
Cow position: | chr29:16109887-16109356 (view UCSC Genome Browser custom track) |
Alignm length: | 539 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 110, 90 |
Conread position: | 276-809 |
Cow position: | chr29:15968996-15969520 (view UCSC Genome Browser custom track) |
Alignm length: | 540 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 105, 44 |
Conread position: | 315-809 |
Cow position: | chr29:28060548-28061045 (view UCSC Genome Browser custom track) |
Alignm length: | 502 |
Alignm identity: | 364 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 66, 46 |
Conread position: | 327-812 |
Cow position: | chr29:21246674-21246186 (view UCSC Genome Browser custom track) |
Alignm length: | 492 |
Alignm identity: | 350 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 34 |
Conread position: | 343-724 |
Cow position: | chr29:31181212-31180830 (view UCSC Genome Browser custom track) |
Alignm length: | 386 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 18 |
Conread position: | 347-586 |
Cow position: | chr29:5983096-5983335 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 184 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 35, 12 |
Conread position: | 350-728 |
Cow position: | chr29:21426974-21427352 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 11 |
Conread position: | 377-718 |
Cow position: | chr29:2367855-2368183 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 219 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 155, 22 |
Conread position: | 394-734 |
Cow position: | chr29:34608909-34609248 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 238 |
Alignm E-value: | 8.99998e-41 |
Alignm gaps (pig, cow): | 17, 96 |
Conread position: | 414-578 |
Cow position: | chr29:43791198-43791033 (view UCSC Genome Browser custom track) |
Alignm length: | 168 |
Alignm identity: | 131 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 120, 13 |
Conread position: | 431-727 |
Cow position: | chr29:32640780-32640492 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 208 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 84, 54 |
Conread position: | 454-809 |
Cow position: | chr29:31121784-31121429 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 79, 35 |
Conread position: | 460-812 |
Cow position: | chr29:12796501-12796845 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 74, 26 |
Conread position: | 496-810 |
Cow position: | chr29:13578356-13578047 (view UCSC Genome Browser custom track) |
Alignm length: | 319 |
Alignm identity: | 220 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 38, 210 |
Conread position: | 515-698 |
Cow position: | chr29:42650239-42650059 (view UCSC Genome Browser custom track) |
Alignm length: | 185 |
Alignm identity: | 130 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 47, 7 |
Conread position: | 559-698 |
Cow position: | chr29:42802055-42801919 (view UCSC Genome Browser custom track) |
Alignm length: | 140 |
Alignm identity: | 105 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 68, 0 |
Conread position: | 559-812 |
Cow position: | chr29:9643852-9644103 (view UCSC Genome Browser custom track) |
Alignm length: | 255 |
Alignm identity: | 188 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 163, 77 |
Conread position: | 561-810 |
Cow position: | chr29:2468061-2468320 (view UCSC Genome Browser custom track) |
Alignm length: | 261 |
Alignm identity: | 178 |
Alignm E-value: | 7e-28 |
Alignm gaps (pig, cow): | 68, 7 |
Conread position: | 605-810 |
Cow position: | chr29:45587472-45587678 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 154 |
Alignm E-value: | 7e-38 |
Alignm gaps (pig, cow): | 121, 0 |
Conread position: | 609-809 |
Cow position: | chr29:14368769-14368568 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 138 |
Alignm E-value: | 5e-25 |
Alignm gaps (pig, cow): | 135, 0 |
Show alignments to all cow chromosomes.