Cow genome map

Conread name: Tra1-TCH01C040031

Conread position: 173-812
Cow position: chr29:38227240-38226613 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 186

Conread position: 176-455
Cow position: chr29:410268-410548 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 183

Conread position: 176-554
Cow position: chr29:45587103-45587469 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 173

Conread position: 176-578
Cow position: chr29:14586179-14585780 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 184

Conread position: 176-783
Cow position: chr29:34799550-34800159 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 183

Conread position: 176-810
Cow position: chr29:45459973-45459339 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 167

Conread position: 176-812
Cow position: chr29:48223-48858 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 185

Conread position: 176-812
Cow position: chr29:2100102-2099463 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 187

Conread position: 176-812
Cow position: chr29:2690157-2689524 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 71

Conread position: 176-812
Cow position: chr29:2841116-2841747 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 158

Conread position: 176-812
Cow position: chr29:6266244-6266874 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 187

Conread position: 176-812
Cow position: chr29:7430962-7431598 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 29

Conread position: 176-812
Cow position: chr29:10647994-10648627 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 183

Conread position: 176-812
Cow position: chr29:16022787-16022162 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 183

Conread position: 176-812
Cow position: chr29:23976097-23975451 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 183

Conread position: 176-812
Cow position: chr29:25932287-25932926 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 187

Conread position: 176-812
Cow position: chr29:26164565-26165201 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 187

Conread position: 176-812
Cow position: chr29:32540067-32539429 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 174

Conread position: 176-812
Cow position: chr29:39079455-39080088 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 187

Conread position: 176-812
Cow position: chr29:40502725-40503361 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 79

Conread position: 177-515
Cow position: chr29:2466078-2466418 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 224

Conread position: 177-812
Cow position: chr29:10823713-10824338 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 186

Conread position: 177-812
Cow position: chr29:19622991-19623626 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 186

Conread position: 177-812
Cow position: chr29:19653364-19652726 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 186

Conread position: 177-812
Cow position: chr29:43322811-43322177 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 119

Conread position: 178-340
Cow position: chr29:21426775-21426933 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 31, 0

Conread position: 178-355
Cow position: chr29:31181670-31181492 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 47, 156

Conread position: 178-495
Cow position: chr29:9643501-9643820 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 146

Conread position: 178-503
Cow position: chr29:803101-803421 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 227
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 49, 75

Conread position: 178-530
Cow position: chr29:18856689-18857041 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 181

Conread position: 178-597
Cow position: chr29:27980664-27981084 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 22

Conread position: 178-671
Cow position: chr29:19885325-19884829 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 181

Conread position: 178-782
Cow position: chr29:35297129-35296525 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 156

Conread position: 178-809
Cow position: chr29:27250087-27250712 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 151

Conread position: 178-810
Cow position: chr29:610357-610993 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 181

Conread position: 178-810
Cow position: chr29:7841051-7840418 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 125

Conread position: 178-811
Cow position: chr29:14013718-14013091 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 10

Conread position: 178-811
Cow position: chr29:14072693-14073322 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 10

Conread position: 178-812
Cow position: chr29:104819-104204 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 16

Conread position: 178-812
Cow position: chr29:2750166-2750764 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 84

Conread position: 178-812
Cow position: chr29:11049533-11048900 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 153

Conread position: 178-812
Cow position: chr29:16770378-16769754 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 183

Conread position: 178-812
Cow position: chr29:20251414-20250777 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 105

Conread position: 178-812
Cow position: chr29:21543114-21543754 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 172

Conread position: 178-812
Cow position: chr29:27040517-27041142 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 43

Conread position: 178-812
Cow position: chr29:35196919-35196305 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 130

Conread position: 178-812
Cow position: chr29:43365747-43366373 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 68

Conread position: 179-810
Cow position: chr29:5957858-5957223 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 180

Conread position: 181-625
Cow position: chr29:22966008-22966445 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 276
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 43, 73

Conread position: 182-579
Cow position: chr29:11841909-11841518 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 48

Conread position: 182-666
Cow position: chr29:11855853-11855364 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 326
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 77, 68

Conread position: 182-812
Cow position: chr29:15949940-15950558 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 177

Conread position: 183-288
Cow position: chr29:15968611-15968718 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 90
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 183-400
Cow position: chr29:34925729-34925505 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 39, 0

Conread position: 183-507
Cow position: chr29:13582318-13581998 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 72

Conread position: 183-809
Cow position: chr29:15894600-15895227 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 176

Conread position: 184-560
Cow position: chr29:669808-670185 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 152

Conread position: 185-519
Cow position: chr29:42650534-42650199 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 166

Conread position: 185-519
Cow position: chr29:42802394-42802059 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 166

Conread position: 194-791
Cow position: chr29:10847853-10848479 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 223

Conread position: 196-812
Cow position: chr29:30811759-30811169 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 32

Conread position: 200-811
Cow position: chr29:1715474-1714879 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 158

Conread position: 218-810
Cow position: chr29:32316256-32315662 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 143

Conread position: 221-654
Cow position: chr29:8062688-8063124 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 282
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 38, 29

Conread position: 231-691
Cow position: chr29:17663104-17662661 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 126

Conread position: 234-452
Cow position: chr29:12796168-12796385 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 165
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 145, 123

Conread position: 267-728
Cow position: chr29:13852861-13853317 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 39

Conread position: 270-807
Cow position: chr29:4634815-4635338 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 337
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 150, 50

Conread position: 271-802
Cow position: chr29:16109887-16109356 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 90

Conread position: 276-809
Cow position: chr29:15968996-15969520 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 44

Conread position: 315-809
Cow position: chr29:28060548-28061045 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 46

Conread position: 327-812
Cow position: chr29:21246674-21246186 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 34

Conread position: 343-724
Cow position: chr29:31181212-31180830 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 18

Conread position: 347-586
Cow position: chr29:5983096-5983335 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 184
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 35, 12

Conread position: 350-728
Cow position: chr29:21426974-21427352 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 11

Conread position: 377-718
Cow position: chr29:2367855-2368183 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 219
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 155, 22

Conread position: 394-734
Cow position: chr29:34608909-34609248 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 238
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 17, 96

Conread position: 414-578
Cow position: chr29:43791198-43791033 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 120, 13

Conread position: 431-727
Cow position: chr29:32640780-32640492 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 208
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 84, 54

Conread position: 454-809
Cow position: chr29:31121784-31121429 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 35

Conread position: 460-812
Cow position: chr29:12796501-12796845 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 26

Conread position: 496-810
Cow position: chr29:13578356-13578047 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 220
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 38, 210

Conread position: 515-698
Cow position: chr29:42650239-42650059 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 7

Conread position: 559-698
Cow position: chr29:42802055-42801919 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 559-812
Cow position: chr29:9643852-9644103 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 188
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 163, 77

Conread position: 561-810
Cow position: chr29:2468061-2468320 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 178
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 68, 7

Conread position: 605-810
Cow position: chr29:45587472-45587678 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 154
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 121, 0

Conread position: 609-809
Cow position: chr29:14368769-14368568 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 138
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 135, 0

Show alignments to all cow chromosomes.