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Cow genome map

           
Conread name:
           
Tra1-TCH01C060056
        

               
Conread position:
               
226-479
               

               
Cow position:
               
chr6:16550540-16550793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
6, 21
               

               
Conread position:
               
263-407
               

               
Cow position:
               
chr6:23898930-23899073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
86, 36
               

               
Conread position:
               
287-407
               

               
Cow position:
               
chr6:19798847-19798727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
63, 93
               

               
Conread position:
               
289-479
               

               
Cow position:
               
chr6:44820205-44820009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 174
               

               
Conread position:
               
295-501
               

               
Cow position:
               
chr6:11087317-11087109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 75
               

               
Conread position:
               
300-499
               

               
Cow position:
               
chr6:14716549-14716750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
50, 110
               

               
Conread position:
               
447-619
               

               
Cow position:
               
chr6:51019443-51019271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
5, 22
               

               
Conread position:
               
451-657
               

               
Cow position:
               
chr6:66293769-66293567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
187, 84
               

               
Conread position:
               
455-658
               

               
Cow position:
               
chr6:5330695-5330494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
183, 36
               

               
Conread position:
               
455-673
               

               
Cow position:
               
chr6:65264264-65264479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
6, 111
               

               
Conread position:
               
460-622
               

               
Cow position:
               
chr6:55764311-55764151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
128, 21
               

               
Conread position:
               
460-658
               

               
Cow position:
               
chr6:51529915-51530106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
178, 37
               

               
Conread position:
               
463-656
               

               
Cow position:
               
chr6:67451099-67451287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
175, 39
               

               
Conread position:
               
469-646
               

               
Cow position:
               
chr6:60852361-60852551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
469-657
               

               
Cow position:
               
chr6:15587320-15587512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 131
               

               
Conread position:
               
469-657
               

               
Cow position:
               
chr6:30122899-30123087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
169, 125
               

               
Conread position:
               
469-658
               

               
Cow position:
               
chr6:59101053-59101240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
169, 21
               

               
Conread position:
               
469-661
               

               
Cow position:
               
chr6:53732251-53732059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
107, 14
               

               
Conread position:
               
470-657
               

               
Cow position:
               
chr6:68246564-68246751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
166, 112
               

               
Conread position:
               
470-658
               

               
Cow position:
               
chr6:6060300-6060490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 73
               

               
Conread position:
               
470-683
               

               
Cow position:
               
chr6:62805913-62805701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 119
               

               
Conread position:
               
471-658
               

               
Cow position:
               
chr6:62224691-62224503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
17, 54
               

               
Conread position:
               
473-658
               

               
Cow position:
               
chr6:19936307-19936488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
165, 11
               

               
Conread position:
               
474-603
               

               
Cow position:
               
chr6:28620366-28620232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
474-655
               

               
Cow position:
               
chr6:42035033-42034857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
16, 24
               

               
Conread position:
               
474-657
               

               
Cow position:
               
chr6:6614889-6614704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
24, 154
               

               
Conread position:
               
474-658
               

               
Cow position:
               
chr6:33510054-33509868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
21, 122
               

               
Conread position:
               
474-660
               

               
Cow position:
               
chr6:47246044-47245859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
143, 28
               

               
Conread position:
               
475-608
               

               
Cow position:
               
chr6:27074577-27074445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 100
               

               
Conread position:
               
475-651
               

               
Cow position:
               
chr6:54828056-54828234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
12, 115
               

               
Conread position:
               
475-656
               

               
Cow position:
               
chr6:37395141-37395317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
12, 39
               

               
Conread position:
               
475-656
               

               
Cow position:
               
chr6:52478151-52478327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
163, 8
               

               
Conread position:
               
475-656
               

               
Cow position:
               
chr6:64432194-64432022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
163, 15
               

               
Conread position:
               
475-657
               

               
Cow position:
               
chr6:5095279-5095459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
27, 53
               

               
Conread position:
               
475-657
               

               
Cow position:
               
chr6:18440215-18440395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
27, 53
               

               
Conread position:
               
475-657
               

               
Cow position:
               
chr6:23024838-23025018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
162, 22
               

               
Conread position:
               
475-657
               

               
Cow position:
               
chr6:30983778-30983602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
27, 79
               

               
Conread position:
               
475-657
               

               
Cow position:
               
chr6:42728909-42728728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
27, 69
               

               
Conread position:
               
475-658
               

               
Cow position:
               
chr6:6201697-6201506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
19, 121
               

               
Conread position:
               
475-658
               

               
Cow position:
               
chr6:8731681-8731495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
13, 35
               

               
Conread position:
               
475-658
               

               
Cow position:
               
chr6:10163936-10163747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
90, 128
               

               
Conread position:
               
475-658
               

               
Cow position:
               
chr6:10176035-10176220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
21, 115
               

               
Conread position:
               
475-658
               

               
Cow position:
               
chr6:16627992-16627816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
19, 58
               

               
Conread position:
               
475-658
               

               
Cow position:
               
chr6:18447252-18447436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
27, 114
               

               
Conread position:
               
475-658
               

               
Cow position:
               
chr6:21052184-21052368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
475-658
               

               
Cow position:
               
chr6:24776399-24776220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
163, 16
               

               
Conread position:
               
475-658
               

               
Cow position:
               
chr6:54840239-54840426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
84, 9
               

               
Conread position:
               
475-658
               

               
Cow position:
               
chr6:55061131-55060944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
92, 22
               

               
Conread position:
               
475-658
               

               
Cow position:
               
chr6:55548272-55548452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
163, 76
               

               
Conread position:
               
475-658
               

               
Cow position:
               
chr6:61631346-61631527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
149, 54
               

               
Conread position:
               
475-658
               

               
Cow position:
               
chr6:64428932-64429114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
163, 113
               

               
Conread position:
               
475-660
               

               
Cow position:
               
chr6:55015145-55014958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
113, 56
               

               
Conread position:
               
476-580
               

               
Cow position:
               
chr6:9375160-9375266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
476-658
               

               
Cow position:
               
chr6:21467002-21467186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 114
               

               
Conread position:
               
476-658
               

               
Cow position:
               
chr6:63251662-63251841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
161, 14
               

               
Conread position:
               
476-660
               

               
Cow position:
               
chr6:7539838-7539653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
6, 110
               

               
Conread position:
               
477-657
               

               
Cow position:
               
chr6:16137509-16137688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
161, 20
               

               
Conread position:
               
477-658
               

               
Cow position:
               
chr6:16411874-16411692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
25, 118
               

               
Conread position:
               
477-658
               

               
Cow position:
               
chr6:21004940-21004758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
477-660
               

               
Cow position:
               
chr6:43787651-43787831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
161, 7
               

               
Conread position:
               
478-608
               

               
Cow position:
               
chr6:19681977-19681847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
478-646
               

               
Cow position:
               
chr6:8186929-8187096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
160, 19
               

               
Conread position:
               
478-646
               

               
Cow position:
               
chr6:16016295-16016127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
19, 111
               

               
Conread position:
               
478-656
               

               
Cow position:
               
chr6:21475985-21475811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
24, 52
               

               
Conread position:
               
478-657
               

               
Cow position:
               
chr6:14152632-14152808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
104, 50
               

               
Conread position:
               
478-657
               

               
Cow position:
               
chr6:18776504-18776333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
478-658
               

               
Cow position:
               
chr6:8688591-8688765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
159, 88
               

               
Conread position:
               
478-658
               

               
Cow position:
               
chr6:17705093-17704913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
160, 110
               

               
Conread position:
               
478-658
               

               
Cow position:
               
chr6:28559799-28559619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
133, 108
               

               
Conread position:
               
478-658
               

               
Cow position:
               
chr6:44543887-44544067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
24, 111
               

               
Conread position:
               
478-658
               

               
Cow position:
               
chr6:69374575-69374751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
160, 107
               

               
Conread position:
               
478-660
               

               
Cow position:
               
chr6:23401734-23401913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
26, 92
               

               
Conread position:
               
478-660
               

               
Cow position:
               
chr6:36808940-36809125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
6, 130
               

               
Conread position:
               
479-614
               

               
Cow position:
               
chr6:35097233-35097369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 31
               

               
Conread position:
               
479-642
               

               
Cow position:
               
chr6:55196474-55196310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
479-644
               

               
Cow position:
               
chr6:49824833-49824998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
23, 110
               

               
Conread position:
               
479-647
               

               
Cow position:
               
chr6:53138682-53138844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
479-654
               

               
Cow position:
               
chr6:31928898-31928722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
23, 110
               

               
Conread position:
               
479-654
               

               
Cow position:
               
chr6:44078773-44078600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
134, 103
               

               
Conread position:
               
479-656
               

               
Cow position:
               
chr6:12761541-12761363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
7, 60
               

               
Conread position:
               
479-657
               

               
Cow position:
               
chr6:36164006-36163826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 117
               

               
Conread position:
               
479-658
               

               
Cow position:
               
chr6:35171872-35171687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
67, 110
               

               
Conread position:
               
479-660
               

               
Cow position:
               
chr6:15974263-15974444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 105
               

               
Conread position:
               
479-660
               

               
Cow position:
               
chr6:17313996-17313815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
109, 158
               

               
Conread position:
               
479-660
               

               
Cow position:
               
chr6:45159798-45159978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
159, 12
               

               
Conread position:
               
479-660
               

               
Cow position:
               
chr6:53932585-53932767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
19, 111
               

               
Conread position:
               
479-661
               

               
Cow position:
               
chr6:33302655-33302472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
19, 92
               

               
Conread position:
               
480-655
               

               
Cow position:
               
chr6:14383933-14383760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
158, 114
               

               
Conread position:
               
480-658
               

               
Cow position:
               
chr6:6996641-6996817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
24, 115
               

               
Conread position:
               
480-660
               

               
Cow position:
               
chr6:42483673-42483494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
19, 115
               

               
Conread position:
               
480-660
               

               
Cow position:
               
chr6:55044382-55044562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
16, 51
               

               
Conread position:
               
481-658
               

               
Cow position:
               
chr6:21183966-21184141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
21, 95
               

               
Conread position:
               
481-658
               

               
Cow position:
               
chr6:34569674-34569489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
15, 132
               

               
Conread position:
               
481-658
               

               
Cow position:
               
chr6:54365073-54365246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
155, 107
               

               
Conread position:
               
482-661
               

               
Cow position:
               
chr6:58725625-58725448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
16, 96
               

               
Conread position:
               
483-583
               

               
Cow position:
               
chr6:54192543-54192442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
483-653
               

               
Cow position:
               
chr6:10225395-10225569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
483-654
               

               
Cow position:
               
chr6:59297298-59297138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
155, 14
               

               
Conread position:
               
483-657
               

               
Cow position:
               
chr6:28561914-28562086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
155, 111
               

               
Conread position:
               
483-657
               

               
Cow position:
               
chr6:34224326-34224161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
115, 14
               

               
Conread position:
               
483-657
               

               
Cow position:
               
chr6:51543156-51542981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
49, 114
               

               
Conread position:
               
483-658
               

               
Cow position:
               
chr6:29851623-29851450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
19, 106
               

               
Conread position:
               
483-660
               

               
Cow position:
               
chr6:55405169-55404991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
54, 112
               

               
Conread position:
               
483-662
               

               
Cow position:
               
chr6:36225364-36225185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
155, 98
               

               
Conread position:
               
484-605
               

               
Cow position:
               
chr6:24362042-24362163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
484-607
               

               
Cow position:
               
chr6:55721862-55721737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
9, 107
               

               
Conread position:
               
484-608
               

               
Cow position:
               
chr6:16738868-16738745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
484-608
               

               
Cow position:
               
chr6:48449069-48448948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
18, 44
               

               
Conread position:
               
484-609
               

               
Cow position:
               
chr6:456693-456820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
11, 49
               

               
Conread position:
               
484-629
               

               
Cow position:
               
chr6:12711539-12711690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
101, 143
               

               
Conread position:
               
484-633
               

               
Cow position:
               
chr6:66590326-66590182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 83
               

               
Conread position:
               
484-634
               

               
Cow position:
               
chr6:51649082-51648931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 103
               

               
Conread position:
               
484-637
               

               
Cow position:
               
chr6:56676592-56676441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
484-637
               

               
Cow position:
               
chr6:62539355-62539499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
484-641
               

               
Cow position:
               
chr6:60088221-60088377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
18, 95
               

               
Conread position:
               
484-652
               

               
Cow position:
               
chr6:24468147-24468308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
132, 18
               

               
Conread position:
               
484-654
               

               
Cow position:
               
chr6:46558308-46558143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
7, 90
               

               
Conread position:
               
484-655
               

               
Cow position:
               
chr6:12928393-12928227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
154, 87
               

               
Conread position:
               
484-656
               

               
Cow position:
               
chr6:13040705-13040524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
83, 13
               

               
Conread position:
               
484-657
               

               
Cow position:
               
chr6:22849999-22850172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
152, 121
               

               
Conread position:
               
484-657
               

               
Cow position:
               
chr6:47540587-47540760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
154, 110
               

               
Conread position:
               
484-658
               

               
Cow position:
               
chr6:4469020-4468850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
18, 105
               

               
Conread position:
               
484-658
               

               
Cow position:
               
chr6:12965107-12964934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
121, 40
               

               
Conread position:
               
484-658
               

               
Cow position:
               
chr6:13565339-13565168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
18, 26
               

               
Conread position:
               
484-658
               

               
Cow position:
               
chr6:14150127-14150298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
18, 52
               

               
Conread position:
               
484-658
               

               
Cow position:
               
chr6:15300587-15300751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
154, 91
               

               
Conread position:
               
484-658
               

               
Cow position:
               
chr6:16502788-16502964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 106
               

               
Conread position:
               
484-658
               

               
Cow position:
               
chr6:35181000-35181175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
18, 105
               

               
Conread position:
               
484-658
               

               
Cow position:
               
chr6:43906427-43906602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
18, 102
               

               
Conread position:
               
484-658
               

               
Cow position:
               
chr6:53711656-53711484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
151, 91
               

               
Conread position:
               
484-658
               

               
Cow position:
               
chr6:55417279-55417446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 92
               

               
Conread position:
               
484-658
               

               
Cow position:
               
chr6:58697375-58697550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
18, 105
               

               
Conread position:
               
484-660
               

               
Cow position:
               
chr6:31846991-31847161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
154, 87
               

               
Conread position:
               
484-660
               

               
Cow position:
               
chr6:35728102-35727929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
154, 51
               

               
Conread position:
               
484-661
               

               
Cow position:
               
chr6:32336293-32336109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
484-662
               

               
Cow position:
               
chr6:24110539-24110358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
8, 106
               

               
Conread position:
               
485-583
               

               
Cow position:
               
chr6:54185006-54185104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
485-633
               

               
Cow position:
               
chr6:56664150-56663994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
485-644
               

               
Cow position:
               
chr6:63233770-63233611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
9, 115
               

               
Conread position:
               
485-646
               

               
Cow position:
               
chr6:67574640-67574481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
153, 6
               

               
Conread position:
               
485-656
               

               
Cow position:
               
chr6:7801143-7801313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
153, 97
               

               
Conread position:
               
485-657
               

               
Cow position:
               
chr6:47790544-47790717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
10, 111
               

               
Conread position:
               
485-658
               

               
Cow position:
               
chr6:1173693-1173875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
485-658
               

               
Cow position:
               
chr6:17997067-17997238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
153, 12
               

               
Conread position:
               
485-658
               

               
Cow position:
               
chr6:19045881-19045704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
21, 106
               

               
Conread position:
               
485-658
               

               
Cow position:
               
chr6:26408251-26408423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
152, 12
               

               
Conread position:
               
485-658
               

               
Cow position:
               
chr6:48436083-48435912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
18, 52
               

               
Conread position:
               
485-658
               

               
Cow position:
               
chr6:67187931-67187766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
17, 37
               

               
Conread position:
               
485-659
               

               
Cow position:
               
chr6:16380799-16380625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
486-658
               

               
Cow position:
               
chr6:47305591-47305423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
486-660
               

               
Cow position:
               
chr6:47151070-47150899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
12, 90
               

               
Conread position:
               
487-656
               

               
Cow position:
               
chr6:15243088-15242920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
151, 15
               

               
Conread position:
               
487-657
               

               
Cow position:
               
chr6:53811835-53811665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
90, 10
               

               
Conread position:
               
487-658
               

               
Cow position:
               
chr6:21175585-21175419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
17, 89
               

               
Conread position:
               
487-658
               

               
Cow position:
               
chr6:28148513-28148338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
58, 15
               

               
Conread position:
               
487-660
               

               
Cow position:
               
chr6:32453638-32453465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
49, 15
               

               
Conread position:
               
488-610
               

               
Cow position:
               
chr6:37827698-37827820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
489-657
               

               
Cow position:
               
chr6:53765645-53765808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
490-590
               

               
Cow position:
               
chr6:54490499-54490599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
490-591
               

               
Cow position:
               
chr6:26929195-26929297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
490-614
               

               
Cow position:
               
chr6:17244026-17243907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
490-646
               

               
Cow position:
               
chr6:22876680-22876837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
12, 99
               

               
Conread position:
               
490-658
               

               
Cow position:
               
chr6:14913987-14914154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
148, 55
               

               
Conread position:
               
490-660
               

               
Cow position:
               
chr6:29852808-29852987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
66, 106
               

               
Conread position:
               
490-660
               

               
Cow position:
               
chr6:40032427-40032270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
12, 52
               

               
Conread position:
               
490-662
               

               
Cow position:
               
chr6:66947572-66947745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 87
               

               
Conread position:
               
490-663
               

               
Cow position:
               
chr6:66058462-66058631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
125, 80
               

               
Conread position:
               
491-592
               

               
Cow position:
               
chr6:62292828-62292929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
491-594
               

               
Cow position:
               
chr6:43540016-43540115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
491-641
               

               
Cow position:
               
chr6:59759415-59759270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
491-644
               

               
Cow position:
               
chr6:17404809-17404656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
85, 31
               

               
Conread position:
               
491-645
               

               
Cow position:
               
chr6:23381420-23381574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
147, 97
               

               
Conread position:
               
491-654
               

               
Cow position:
               
chr6:15305817-15305654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
103, 84
               

               
Conread position:
               
491-654
               

               
Cow position:
               
chr6:30825531-30825683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
147, 26
               

               
Conread position:
               
491-656
               

               
Cow position:
               
chr6:7291557-7291399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
124, 80
               

               
Conread position:
               
491-656
               

               
Cow position:
               
chr6:8326044-8325880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
74, 84
               

               
Conread position:
               
491-657
               

               
Cow position:
               
chr6:62670117-62669948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
491-658
               

               
Cow position:
               
chr6:1103499-1103657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
147, 39
               

               
Conread position:
               
491-658
               

               
Cow position:
               
chr6:4760240-4760073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 86
               

               
Conread position:
               
491-658
               

               
Cow position:
               
chr6:15937603-15937773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
8, 99
               

               
Conread position:
               
491-658
               

               
Cow position:
               
chr6:16387457-16387625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
11, 111
               

               
Conread position:
               
491-658
               

               
Cow position:
               
chr6:24536279-24536450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
491-658
               

               
Cow position:
               
chr6:24903329-24903496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
146, 103
               

               
Conread position:
               
491-658
               

               
Cow position:
               
chr6:34463344-34463506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
23, 81
               

               
Conread position:
               
491-658
               

               
Cow position:
               
chr6:43345193-43345360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 95
               

               
Conread position:
               
491-658
               

               
Cow position:
               
chr6:49686066-49685899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
147, 97
               

               
Conread position:
               
491-658
               

               
Cow position:
               
chr6:53841257-53841424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
144, 97
               

               
Conread position:
               
491-658
               

               
Cow position:
               
chr6:54127575-54127731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
491-658
               

               
Cow position:
               
chr6:66259983-66259811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
117, 97
               

               
Conread position:
               
491-660
               

               
Cow position:
               
chr6:14263642-14263811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
11, 98
               

               
Conread position:
               
491-660
               

               
Cow position:
               
chr6:59620903-59620733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
11, 97
               

               
Conread position:
               
491-660
               

               
Cow position:
               
chr6:62724804-62724635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
147, 97
               

               
Conread position:
               
492-593
               

               
Cow position:
               
chr6:53024566-53024667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
492-655
               

               
Cow position:
               
chr6:62079165-62079007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
13, 42
               

               
Conread position:
               
492-658
               

               
Cow position:
               
chr6:32006211-32006373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
123, 83
               

               
Conread position:
               
492-658
               

               
Cow position:
               
chr6:42567741-42567574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
147, 96
               

               
Conread position:
               
493-637
               

               
Cow position:
               
chr6:30688267-30688408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
493-644
               

               
Cow position:
               
chr6:10399663-10399814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
11, 100
               

               
Conread position:
               
493-646
               

               
Cow position:
               
chr6:24514290-24514449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
493-658
               

               
Cow position:
               
chr6:13367527-13367367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
10, 83
               

               
Conread position:
               
493-658
               

               
Cow position:
               
chr6:29496236-29496074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
145, 36
               

               
Conread position:
               
493-658
               

               
Cow position:
               
chr6:47356071-47355905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
9, 60
               

               
Conread position:
               
493-660
               

               
Cow position:
               
chr6:36939117-36938947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
79, 9
               

               
Conread position:
               
493-660
               

               
Cow position:
               
chr6:50883436-50883596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
146, 9
               

               
Conread position:
               
494-646
               

               
Cow position:
               
chr6:50444872-50445024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
142, 100
               

               
Conread position:
               
494-657
               

               
Cow position:
               
chr6:3330239-3330076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
144, 100
               

               
Conread position:
               
494-658
               

               
Cow position:
               
chr6:37149425-37149271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
144, 24
               

               
Conread position:
               
494-660
               

               
Cow position:
               
chr6:21535283-21535119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
143, 88
               

               
Conread position:
               
494-679
               

               
Cow position:
               
chr6:60143956-60144133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
121, 80
               

               
Conread position:
               
496-609
               

               
Cow position:
               
chr6:36267241-36267128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
497-617
               

               
Cow position:
               
chr6:16700494-16700375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
497-622
               

               
Cow position:
               
chr6:65831603-65831479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
497-625
               

               
Cow position:
               
chr6:29775858-29775727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
497-641
               

               
Cow position:
               
chr6:50682059-50682202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
497-646
               

               
Cow position:
               
chr6:11247008-11246861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
497-646
               

               
Cow position:
               
chr6:47989666-47989519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
50, 75
               

               
Conread position:
               
497-651
               

               
Cow position:
               
chr6:57935336-57935484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
497-654
               

               
Cow position:
               
chr6:10039966-10039809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
141, 91
               

               
Conread position:
               
497-654
               

               
Cow position:
               
chr6:57545989-57546143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
141, 25
               

               
Conread position:
               
497-657
               

               
Cow position:
               
chr6:55919692-55919852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
141, 97
               

               
Conread position:
               
497-658
               

               
Cow position:
               
chr6:8369664-8369503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
141, 97
               

               
Conread position:
               
497-658
               

               
Cow position:
               
chr6:19563239-19563402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
497-658
               

               
Cow position:
               
chr6:32126292-32126138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
497-658
               

               
Cow position:
               
chr6:55296852-55297013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
139, 91
               

               
Conread position:
               
497-658
               

               
Cow position:
               
chr6:57467839-57467678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
141, 91
               

               
Conread position:
               
497-658
               

               
Cow position:
               
chr6:58304652-58304496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
141, 38
               

               
Conread position:
               
497-658
               

               
Cow position:
               
chr6:66434194-66434031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
139, 91
               

               
Conread position:
               
497-660
               

               
Cow position:
               
chr6:15446953-15447118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
497-660
               

               
Cow position:
               
chr6:24651742-24651902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
141, 20
               

               
Conread position:
               
497-660
               

               
Cow position:
               
chr6:34251058-34251219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
497-660
               

               
Cow position:
               
chr6:63168523-63168688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
497-661
               

               
Cow position:
               
chr6:28088807-28088970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
141, 66
               

               
Conread position:
               
497-661
               

               
Cow position:
               
chr6:41014734-41014901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
75, 93
               

               
Conread position:
               
497-672
               

               
Cow position:
               
chr6:12669338-12669162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
79, 98
               

               
Conread position:
               
498-637
               

               
Cow position:
               
chr6:34076402-34076270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
498-648
               

               
Cow position:
               
chr6:21346914-21347059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
140, 84
               

               
Conread position:
               
498-652
               

               
Cow position:
               
chr6:26764583-26764740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
80, 99
               

               
Conread position:
               
498-652
               

               
Cow position:
               
chr6:55945717-55945876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
498-656
               

               
Cow position:
               
chr6:3937026-3936866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
498-656
               

               
Cow position:
               
chr6:50504695-50504540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
66, 78
               

               
Conread position:
               
498-658
               

               
Cow position:
               
chr6:13742226-13742070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
498-658
               

               
Cow position:
               
chr6:26054661-26054823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
498-658
               

               
Cow position:
               
chr6:35984895-35985055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
140, 90
               

               
Conread position:
               
498-658
               

               
Cow position:
               
chr6:56986409-56986569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
140, 96
               

               
Conread position:
               
498-658
               

               
Cow position:
               
chr6:62437656-62437496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
138, 90
               

               
Conread position:
               
498-661
               

               
Cow position:
               
chr6:5445907-5445745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
140, 95
               

               
Conread position:
               
499-584
               

               
Cow position:
               
chr6:31231052-31231137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
86
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
499-637
               

               
Cow position:
               
chr6:22502610-22502745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
499-637
               

               
Cow position:
               
chr6:57143456-57143593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
499-657
               

               
Cow position:
               
chr6:18608572-18608729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
139, 89
               

               
Conread position:
               
499-657
               

               
Cow position:
               
chr6:34475320-34475478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
139, 72
               

               
Conread position:
               
499-658
               

               
Cow position:
               
chr6:54821072-54820913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
137, 89
               

               
Conread position:
               
499-659
               

               
Cow position:
               
chr6:3952759-3952599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
139, 95
               

               
Conread position:
               
499-660
               

               
Cow position:
               
chr6:50771123-50771284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
139, 23
               

               
Conread position:
               
499-661
               

               
Cow position:
               
chr6:57300008-57299836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
499-662
               

               
Cow position:
               
chr6:57079664-57079500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
139, 95
               

               
Conread position:
               
499-662
               

               
Cow position:
               
chr6:68594227-68594062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
93, 33
               

               
Conread position:
               
500-608
               

               
Cow position:
               
chr6:26072988-26073095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
500-654
               

               
Cow position:
               
chr6:38033095-38032943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 74
               

               
Conread position:
               
500-655
               

               
Cow position:
               
chr6:46173021-46173174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
138, 70
               

               
Conread position:
               
500-659
               

               
Cow position:
               
chr6:67951194-67951030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
69, 27
               

               
Conread position:
               
500-661
               

               
Cow position:
               
chr6:61110019-61109866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
501-657
               

               
Cow position:
               
chr6:56581818-56581976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
75, 95
               

               
Conread position:
               
501-658
               

               
Cow position:
               
chr6:19402081-19401932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
501-658
               

               
Cow position:
               
chr6:19996851-19996696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
137, 92
               

               
Conread position:
               
501-661
               

               
Cow position:
               
chr6:57089440-57089281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
137, 84
               

               
Conread position:
               
502-650
               

               
Cow position:
               
chr6:6117413-6117555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
136, 69
               

               
Conread position:
               
502-654
               

               
Cow position:
               
chr6:24781316-24781473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
71, 100
               

               
Conread position:
               
502-656
               

               
Cow position:
               
chr6:21350796-21350949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
502-656
               

               
Cow position:
               
chr6:38207250-38207406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
9, 33
               

               
Conread position:
               
502-658
               

               
Cow position:
               
chr6:45094813-45094654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
502-660
               

               
Cow position:
               
chr6:38853421-38853579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
92, 80
               

               
Conread position:
               
503-641
               

               
Cow position:
               
chr6:61883939-61884075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
503-658
               

               
Cow position:
               
chr6:37692983-37692832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
135, 22
               

               
Conread position:
               
504-658
               

               
Cow position:
               
chr6:19446486-19446331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
82, 59
               

               
Conread position:
               
507-658
               

               
Cow position:
               
chr6:48379381-48379532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
131, 80
               

               
Conread position:
               
508-681
               

               
Cow position:
               
chr6:8161456-8161627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
127, 86
               

               
Conread position:
               
509-658
               

               
Cow position:
               
chr6:41375998-41375851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
129, 74
               

               
Conread position:
               
509-659
               

               
Cow position:
               
chr6:4691736-4691894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
7, 122
               

               
Conread position:
               
509-661
               

               
Cow position:
               
chr6:27219394-27219246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
129, 63
               

               
Conread position:
               
510-653
               

               
Cow position:
               
chr6:61681305-61681164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
118, 82
               

               
Conread position:
               
512-656
               

               
Cow position:
               
chr6:65534943-65535087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
124, 87
               

               
Conread position:
               
512-657
               

               
Cow position:
               
chr6:47450694-47450839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
126, 82
               

               
Conread position:
               
512-658
               

               
Cow position:
               
chr6:2585166-2585024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
126, 64
               

               
Conread position:
               
512-658
               

               
Cow position:
               
chr6:61644631-61644777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
126, 76
               

               
Conread position:
               
512-660
               

               
Cow position:
               
chr6:51835623-51835479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
126, 47
               

               
Conread position:
               
512-661
               

               
Cow position:
               
chr6:41733860-41733710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
126, 82
               

               
Conread position:
               
512-662
               

               
Cow position:
               
chr6:14471590-14471439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
118, 75
               

               
Conread position:
               
512-662
               

               
Cow position:
               
chr6:34380591-34380738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
67, 50
               

               
Conread position:
               
514-656
               

               
Cow position:
               
chr6:19696032-19695890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
121, 74
               

               
Conread position:
               
514-658
               

               
Cow position:
               
chr6:15058598-15058458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
124, 49
               

               
Conread position:
               
514-660
               

               
Cow position:
               
chr6:33450754-33450894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
124, 55
               

               
Conread position:
               
522-656
               

               
Cow position:
               
chr6:35842875-35842742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
116, 66
               

               
Conread position:
               
522-659
               

               
Cow position:
               
chr6:8125544-8125407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
116, 66
               

               
Conread position:
               
523-646
               

               
Cow position:
               
chr6:33290185-33290062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
115, 73
               

               
Conread position:
               
524-654
               

               
Cow position:
               
chr6:30895777-30895906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
114, 69
               

               
Conread position:
               
524-658
               

               
Cow position:
               
chr6:50984438-50984304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
57, 71
               

               
Conread position:
               
531-658
               

               
Cow position:
               
chr6:69153618-69153491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
107, 57
               

               
Conread position:
               
532-658
               

               
Cow position:
               
chr6:31865300-31865174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
106, 56
               

               
Conread position:
               
534-680
               

               
Cow position:
               
chr6:21514403-21514546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
104, 20
               

               
Conread position:
               
542-658
               

               
Cow position:
               
chr6:58076591-58076475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
94, 46
               
Show alignments to all cow chromosomes.