Cow genome map

Conread name: Tra1-TCH01C100019

Conread position: 1-106
Cow position: chr12:45802410-45802522 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 95
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 1-116
Cow position: chr12:39158884-39159007 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 1-125
Cow position: chr12:42167119-42166987 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 1-141
Cow position: chr12:22933446-22933597 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 121
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 1-143
Cow position: chr12:43002999-43003152 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 16, 20

Conread position: 1-151
Cow position: chr12:42855894-42856053 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 1-172
Cow position: chr12:31260776-31260955 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 145
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 16, 20

Conread position: 1-178
Cow position: chr12:8718710-8718898 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 145
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 52, 0

Conread position: 1-180
Cow position: chr12:35311273-35311461 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 52, 82

Conread position: 1-181
Cow position: chr12:23441274-23441456 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 52, 117

Conread position: 1-181
Cow position: chr12:37562659-37562472 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 52, 111

Conread position: 1-182
Cow position: chr12:29412193-29412389 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 148
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 1-184
Cow position: chr12:1849452-1849642 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 1-184
Cow position: chr12:19693560-19693754 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 154
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr12:1406106-1405911 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 149
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr12:1865248-1865443 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 157
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr12:3545311-3545116 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr12:4965178-4965373 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr12:6530251-6530055 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 156
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr12:7873031-7872836 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 150
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr12:10359353-10359161 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 148
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr12:12788096-12788291 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 156
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr12:12928251-12928446 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr12:17786982-17787177 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 157
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr12:18297319-18297124 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 154
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr12:21250655-21250850 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr12:21433001-21432803 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 149
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 52, 170

Conread position: 1-185
Cow position: chr12:21672275-21672470 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 154
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 14, 20

Conread position: 1-185
Cow position: chr12:25265674-25265869 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr12:25838943-25838748 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 150
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr12:26268557-26268752 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr12:27929067-27929262 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr12:32900493-32900688 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 156
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr12:35459418-35459223 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 155
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr12:37843597-37843792 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 155
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr12:42604525-42604720 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 52, 0

Conread position: 1-187
Cow position: chr12:1885681-1885878 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 52, 0

Conread position: 1-187
Cow position: chr12:10490719-10490519 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 159
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 52, 0

Conread position: 1-187
Cow position: chr12:14811349-14811545 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 52, 161

Conread position: 1-187
Cow position: chr12:18116059-18115865 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 152
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 52, 0

Conread position: 1-187
Cow position: chr12:32011118-32011315 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 52, 0

Conread position: 1-199
Cow position: chr12:30011312-30011519 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 160
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 52, 151

Conread position: 1-199
Cow position: chr12:30016419-30016626 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 160
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 52, 151

Conread position: 1-200
Cow position: chr12:5713621-5713413 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 164
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 52, 188

Conread position: 1-201
Cow position: chr12:13042581-13042796 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 166
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 52, 0

Conread position: 1-201
Cow position: chr12:22748875-22748661 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 162
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 52, 0

Conread position: 1-201
Cow position: chr12:24981366-24981152 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 166
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 52, 0

Conread position: 1-201
Cow position: chr12:27851995-27852205 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 165
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 52, 187

Conread position: 1-201
Cow position: chr12:47415460-47415250 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 168
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 52, 111

Conread position: 1-202
Cow position: chr12:1408492-1408278 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 170
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 52, 151

Conread position: 1-202
Cow position: chr12:28707966-28708179 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 160
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 52, 0

Conread position: 1-202
Cow position: chr12:35368036-35367829 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 159
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 52, 76

Conread position: 1-202
Cow position: chr12:38774735-38774533 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 104, 70

Conread position: 1-209
Cow position: chr12:35135951-35135734 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 52, 0

Conread position: 1-219
Cow position: chr12:5800439-5800206 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 170
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 52, 0

Conread position: 1-219
Cow position: chr12:5905184-5904959 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 166
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 52, 0

Conread position: 1-220
Cow position: chr12:550954-551187 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 174
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 48, 0

Conread position: 1-220
Cow position: chr12:3181068-3180835 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 173
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 52, 0

Conread position: 1-220
Cow position: chr12:6404128-6404361 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 179
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 52, 0

Conread position: 1-220
Cow position: chr12:22286276-22286509 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 166
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 51, 110

Conread position: 1-220
Cow position: chr12:25260093-25260326 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 178
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 52, 0

Conread position: 1-220
Cow position: chr12:27505991-27506223 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 179
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 52, 0

Conread position: 1-221
Cow position: chr12:8673790-8674025 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 180
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 52, 218

Conread position: 1-221
Cow position: chr12:11101907-11101674 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 184
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 52, 216

Conread position: 1-221
Cow position: chr12:22202022-22202255 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 179
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 52, 216

Conread position: 1-221
Cow position: chr12:24028824-24029056 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 179
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 52, 215

Conread position: 1-221
Cow position: chr12:31328671-31328903 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 180
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 52, 123

Conread position: 1-221
Cow position: chr12:40867992-40867759 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 185
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 52, 216

Conread position: 1-221
Cow position: chr12:41337570-41337806 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 183
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 34, 219

Conread position: 2-150
Cow position: chr12:1520812-1520657 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 2-154
Cow position: chr12:379135-378971 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 128
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 2-161
Cow position: chr12:13167046-13167212 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 51, 110

Conread position: 2-167
Cow position: chr12:34514232-34514407 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 138
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 51, 141

Conread position: 2-175
Cow position: chr12:8542221-8542405 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 146
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 15, 19

Conread position: 2-180
Cow position: chr12:32340450-32340261 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 149
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 15, 19

Conread position: 2-181
Cow position: chr12:1511107-1511297 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 2-181
Cow position: chr12:9106855-9106665 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr12:464952-465146 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 149
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr12:1055851-1056044 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 152
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 51, 186

Conread position: 2-185
Cow position: chr12:1437108-1437301 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 148
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 54, 0

Conread position: 2-185
Cow position: chr12:1855201-1855395 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr12:8839912-8839718 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 154
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr12:10790588-10790782 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 154
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr12:14568166-14568360 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 151
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr12:15925095-15925289 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 150
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr12:17718954-17718763 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 147
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr12:18724409-18724215 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr12:21665796-21665600 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 152
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr12:31027162-31027356 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 150
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr12:32146972-32147165 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr12:32917985-32917794 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 153
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr12:35163441-35163247 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 151
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr12:41185228-41185034 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 155
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr12:43533745-43533551 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr12:44758081-44757887 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 15, 19

Conread position: 2-201
Cow position: chr12:21212442-21212228 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 49, 0

Conread position: 2-221
Cow position: chr12:28763357-28763589 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 176
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 51, 179

Conread position: 3-176
Cow position: chr12:2967578-2967399 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 46, 0

Conread position: 3-221
Cow position: chr12:3716619-3716847 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 177
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 49, 176

Conread position: 6-201
Cow position: chr12:22480772-22480570 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 154
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 47, 0

Show alignments to all cow chromosomes.