Cow genome map

Conread name: Tra1-TCH01C100019

Conread position: 1-125
Cow position: chr17:5549014-5549146 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 16, 20

Conread position: 1-133
Cow position: chr17:24334173-24334036 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 39, 56

Conread position: 1-142
Cow position: chr17:31099390-31099238 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 16, 20

Conread position: 1-149
Cow position: chr17:3386824-3386671 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 124
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 52, 0

Conread position: 1-151
Cow position: chr17:2584188-2584028 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 128
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 52, 0

Conread position: 1-161
Cow position: chr17:35437580-35437409 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 132
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 1-164
Cow position: chr17:38363793-38363968 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 1-166
Cow position: chr17:17240480-17240653 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 52, 142

Conread position: 1-167
Cow position: chr17:4152731-4152907 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 140
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 52, 155

Conread position: 1-170
Cow position: chr17:11677700-11677880 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 16, 20

Conread position: 1-174
Cow position: chr17:15334918-15335100 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 141
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 52, 0

Conread position: 1-176
Cow position: chr17:40811253-40811071 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 52, 139

Conread position: 1-181
Cow position: chr17:6612559-6612368 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 150
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 16, 20

Conread position: 1-181
Cow position: chr17:15809525-15809333 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 145
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 52, 0

Conread position: 1-181
Cow position: chr17:39823657-39823848 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 151
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 16, 20

Conread position: 1-184
Cow position: chr17:2244536-2244730 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 51, 0

Conread position: 1-184
Cow position: chr17:4107526-4107720 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 145
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 52, 0

Conread position: 1-184
Cow position: chr17:33934281-33934472 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 145
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr17:400078-400273 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr17:5805952-5806147 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 157
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr17:8212591-8212398 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 154
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr17:16699940-16700135 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 150
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr17:20361270-20361464 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 154
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 48, 0

Conread position: 1-185
Cow position: chr17:21716999-21716804 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 154
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr17:24031334-24031143 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 147
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr17:25834954-25834759 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 156
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr17:27791258-27791450 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 152
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr17:29824423-29824618 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 154
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr17:31671363-31671558 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 153
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr17:34235714-34235909 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 155
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr17:34564883-34564688 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 155
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 16, 20

Conread position: 1-187
Cow position: chr17:6123320-6123123 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 150
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 51, 0

Conread position: 1-187
Cow position: chr17:18777299-18777492 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 52, 111

Conread position: 1-187
Cow position: chr17:29213160-29212966 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 151
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 52, 109

Conread position: 1-193
Cow position: chr17:29156918-29156715 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 51, 0

Conread position: 1-197
Cow position: chr17:29951038-29950829 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 165
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 51, 0

Conread position: 1-198
Cow position: chr17:2179365-2179162 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 142
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 52, 173

Conread position: 1-200
Cow position: chr17:18814684-18814480 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 143
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 52, 128

Conread position: 1-201
Cow position: chr17:14006945-14006737 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 160
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 52, 185

Conread position: 1-201
Cow position: chr17:16904116-16903902 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 174
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 48, 0

Conread position: 1-201
Cow position: chr17:19214873-19215088 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 167
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 52, 0

Conread position: 1-201
Cow position: chr17:43992021-43991807 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 164
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 52, 0

Conread position: 1-202
Cow position: chr17:148445-148228 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 1-202
Cow position: chr17:3306122-3305912 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 52, 182

Conread position: 1-202
Cow position: chr17:4123262-4123477 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 1-202
Cow position: chr17:11913214-11913427 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 166
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 47, 150

Conread position: 1-202
Cow position: chr17:18591937-18591732 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 52, 172

Conread position: 1-202
Cow position: chr17:21666536-21666321 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 168
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 52, 0

Conread position: 1-202
Cow position: chr17:29083701-29083499 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 157
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 52, 146

Conread position: 1-202
Cow position: chr17:33272175-33272391 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 165
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 47, 0

Conread position: 1-202
Cow position: chr17:41014697-41014481 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 50, 150

Conread position: 1-218
Cow position: chr17:997643-997869 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 179
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 52, 71

Conread position: 1-219
Cow position: chr17:8450247-8450015 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 166
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 52, 159

Conread position: 1-220
Cow position: chr17:2201834-2201601 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 179
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 52, 0

Conread position: 1-220
Cow position: chr17:29471967-29471734 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 177
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 52, 0

Conread position: 1-221
Cow position: chr17:11083603-11083831 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 173
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 52, 41

Conread position: 1-221
Cow position: chr17:14243369-14243130 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 187
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 52, 222

Conread position: 1-221
Cow position: chr17:24026449-24026682 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 103

Conread position: 1-221
Cow position: chr17:25739833-25739600 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 177
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 51, 215

Conread position: 2-121
Cow position: chr17:907836-907709 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 105
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 2-126
Cow position: chr17:28155823-28155955 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 2-138
Cow position: chr17:13967025-13967172 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 15, 19

Conread position: 2-150
Cow position: chr17:28539526-28539368 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 2-161
Cow position: chr17:3155452-3155622 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 50, 0

Conread position: 2-170
Cow position: chr17:12856787-12856606 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 141
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr17:2265724-2265530 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr17:5638356-5638550 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 156
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr17:5671984-5672178 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 156
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr17:8993805-8993998 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 156
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr17:15093926-15094120 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 149
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr17:15559108-15558914 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 154
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr17:16505210-16505405 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr17:17958132-17957939 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 150
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 51, 173

Conread position: 2-185
Cow position: chr17:20226137-20225944 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 155
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr17:20391310-20391116 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 156
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr17:20546673-20546479 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 150
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr17:26829208-26829402 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr17:31986665-31986859 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 152
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr17:43471055-43471249 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 15, 19

Conread position: 2-187
Cow position: chr17:36790594-36790406 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 103, 50

Conread position: 2-220
Cow position: chr17:7396754-7396985 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 170
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 15, 19

Conread position: 2-220
Cow position: chr17:22563676-22563448 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 49, 87

Conread position: 2-220
Cow position: chr17:28024355-28024581 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 171
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 51, 184

Conread position: 3-144
Cow position: chr17:18828607-18828759 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 3-183
Cow position: chr17:18721110-18721300 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 149
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 50, 0

Conread position: 3-185
Cow position: chr17:184682-184489 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 50, 0

Conread position: 3-185
Cow position: chr17:3652192-3652385 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 151
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 50, 0

Conread position: 3-221
Cow position: chr17:3197097-3197326 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 181
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 50, 121

Conread position: 5-187
Cow position: chr17:23884282-23884468 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 56, 115

Show alignments to all cow chromosomes.