Cow genome map

Conread name: Tra1-TCH01C100019

Conread position: 1-119
Cow position: chr18:268636-268762 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 1-125
Cow position: chr18:6829651-6829783 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 1-125
Cow position: chr18:21738138-21738006 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 16, 20

Conread position: 1-125
Cow position: chr18:43284335-43284466 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 110
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 1-125
Cow position: chr18:45886829-45886960 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 109
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 1-142
Cow position: chr18:36444438-36444286 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 1-149
Cow position: chr18:28658496-28658652 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 123
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 1-150
Cow position: chr18:26822357-26822197 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 128
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 48, 0

Conread position: 1-158
Cow position: chr18:29241081-29240909 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 52, 0

Conread position: 1-168
Cow position: chr18:24678637-24678459 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 52, 0

Conread position: 1-170
Cow position: chr18:23466161-23466337 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 52, 139

Conread position: 1-174
Cow position: chr18:22790654-22790834 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 50, 91

Conread position: 1-179
Cow position: chr18:7946457-7946271 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 53, 0

Conread position: 1-181
Cow position: chr18:19356267-19356076 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 151
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 52, 0

Conread position: 1-181
Cow position: chr18:27540182-27539991 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 149
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 52, 0

Conread position: 1-183
Cow position: chr18:33607992-33607802 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 52, 182

Conread position: 1-184
Cow position: chr18:16471458-16471644 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 147
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 7, 65

Conread position: 1-185
Cow position: chr18:16462894-16463085 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 146
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr18:27995439-27995244 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 154
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr18:31139509-31139314 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 152
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr18:33616662-33616857 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 154
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr18:35443617-35443812 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 150
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr18:36134878-36135073 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 157
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr18:36183641-36183836 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 157
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr18:42608916-42609111 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 154
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 51, 0

Conread position: 1-185
Cow position: chr18:51459085-51459280 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr18:52629498-52629693 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 155
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr18:54118984-54119179 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 155
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 16, 20

Conread position: 1-187
Cow position: chr18:2853028-2853225 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 1-187
Cow position: chr18:25355275-25355084 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 156
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 52, 111

Conread position: 1-187
Cow position: chr18:30844146-30844343 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 155
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 52, 0

Conread position: 1-196
Cow position: chr18:27990517-27990308 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 161
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 52, 0

Conread position: 1-197
Cow position: chr18:31587266-31587474 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 159
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 52, 173

Conread position: 1-201
Cow position: chr18:7054971-7054757 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 166
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 52, 0

Conread position: 1-201
Cow position: chr18:16641208-16640994 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 162
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 52, 0

Conread position: 1-201
Cow position: chr18:23802780-23802569 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 169
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 52, 159

Conread position: 1-201
Cow position: chr18:30386245-30386459 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 163
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 52, 0

Conread position: 1-201
Cow position: chr18:37509718-37509508 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 91

Conread position: 1-201
Cow position: chr18:43430758-43430549 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 168
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 52, 170

Conread position: 1-202
Cow position: chr18:1955111-1955326 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 51, 0

Conread position: 1-202
Cow position: chr18:9365303-9365093 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 165
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 52, 186

Conread position: 1-202
Cow position: chr18:16390469-16390684 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 47, 189

Conread position: 1-202
Cow position: chr18:21175568-21175355 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 52, 93

Conread position: 1-202
Cow position: chr18:30248704-30248917 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 164
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 52, 0

Conread position: 1-202
Cow position: chr18:51713303-51713518 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 45, 0

Conread position: 1-220
Cow position: chr18:13508324-13508541 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 157
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 48, 39

Conread position: 1-220
Cow position: chr18:28968529-28968762 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 1-220
Cow position: chr18:29585852-29586085 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 181
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 52, 0

Conread position: 1-220
Cow position: chr18:45979125-45978903 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 172
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 52, 144

Conread position: 1-220
Cow position: chr18:54065320-54065548 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 179
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 48, 0

Conread position: 1-221
Cow position: chr18:5536730-5536500 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 180
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 52, 65

Conread position: 1-221
Cow position: chr18:14419737-14419504 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 216

Conread position: 1-221
Cow position: chr18:25924129-25923897 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 182
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 52, 167

Conread position: 1-221
Cow position: chr18:27833667-27833899 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 176
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 52, 163

Conread position: 1-221
Cow position: chr18:36512387-36512157 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 179
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 52, 187

Conread position: 1-221
Cow position: chr18:51485347-51485114 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 216

Conread position: 1-221
Cow position: chr18:52656556-52656321 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 178
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 45, 218

Conread position: 1-312
Cow position: chr18:22181694-22182013 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 109
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 1-363
Cow position: chr18:871217-870838 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 296

Conread position: 2-125
Cow position: chr18:31201788-31201657 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 15, 19

Conread position: 2-161
Cow position: chr18:30677073-30676903 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 135
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 15, 19

Conread position: 2-170
Cow position: chr18:21207138-21206959 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 142
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 15, 19

Conread position: 2-175
Cow position: chr18:23131935-23132119 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 147
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 15, 19

Conread position: 2-180
Cow position: chr18:7050344-7050155 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 148
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 51, 0

Conread position: 2-184
Cow position: chr18:51601908-51602099 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 145
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 51, 72

Conread position: 2-185
Cow position: chr18:13270661-13270475 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 145
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 51, 96

Conread position: 2-185
Cow position: chr18:16857544-16857350 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 152
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr18:17742256-17742062 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr18:18215263-18215448 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 155
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr18:24037092-24037281 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 51, 102

Conread position: 2-185
Cow position: chr18:26242701-26242894 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 154
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 51, 77

Conread position: 2-185
Cow position: chr18:29079496-29079302 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 150
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr18:42425332-42425138 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 150
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr18:42622957-42623151 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 151
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr18:42629123-42628929 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 151
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr18:51580026-51580220 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 155
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 15, 20

Conread position: 2-186
Cow position: chr18:12269914-12269720 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 51, 162

Conread position: 2-187
Cow position: chr18:22275624-22275822 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 43, 178

Conread position: 2-193
Cow position: chr18:25006169-25006372 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 155
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 51, 0

Conread position: 2-199
Cow position: chr18:31563185-31563390 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 51, 184

Conread position: 2-201
Cow position: chr18:36336299-36336511 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 166
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 51, 173

Conread position: 2-201
Cow position: chr18:42080261-42080472 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 51, 99

Conread position: 2-202
Cow position: chr18:55555010-55554796 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 15, 19

Conread position: 2-219
Cow position: chr18:54366057-54366288 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 180
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 15, 19

Conread position: 2-220
Cow position: chr18:55001353-55001584 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 162
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 50, 209

Conread position: 2-223
Cow position: chr18:40722082-40721856 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 177
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 51, 206

Conread position: 3-187
Cow position: chr18:37733447-37733252 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 50, 0

Conread position: 3-201
Cow position: chr18:51698397-51698186 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 164
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 50, 177

Conread position: 3-221
Cow position: chr18:35637571-35637344 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 177
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 50, 147

Conread position: 3-245
Cow position: chr18:33407049-33406802 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 50, 127

Conread position: 5-161
Cow position: chr18:43066649-43066479 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 5-161
Cow position: chr18:43075673-43075503 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 5-181
Cow position: chr18:42966247-42966059 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 150
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 48, 0

Conread position: 5-186
Cow position: chr18:30034955-30035146 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 146
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 48, 170

Conread position: 5-221
Cow position: chr18:41837334-41837563 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 180
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 48, 210

Show alignments to all cow chromosomes.