Cow genome map
| Conread name: | Tra1-TCH01C100019 |
| Conread position: | 1-114 |
| Cow position: | chr19:54376156-54376277 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-121 |
| Cow position: | chr19:1503513-1503385 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 1-121 |
| Cow position: | chr19:42156341-42156213 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-124 |
| Cow position: | chr19:42664380-42664508 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-125 |
| Cow position: | chr19:4278500-4278368 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-135 |
| Cow position: | chr19:29108330-29108185 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-150 |
| Cow position: | chr19:4283532-4283692 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-150 |
| Cow position: | chr19:30540627-30540787 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-159 |
| Cow position: | chr19:53824673-53824501 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-161 |
| Cow position: | chr19:7480198-7480369 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-183 |
| Cow position: | chr19:37844012-37844208 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-184 |
| Cow position: | chr19:19173426-19173238 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 52, 87 |
| Conread position: | 1-184 |
| Cow position: | chr19:20671840-20672027 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 50, 132 |
| Conread position: | 1-184 |
| Cow position: | chr19:35362793-35362987 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-185 |
| Cow position: | chr19:5679885-5680080 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-185 |
| Cow position: | chr19:5887918-5887723 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 1-185 |
| Cow position: | chr19:8206253-8206448 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-185 |
| Cow position: | chr19:20108146-20107954 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 52, 158 |
| Conread position: | 1-185 |
| Cow position: | chr19:26518570-26518760 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 52, 146 |
| Conread position: | 1-185 |
| Cow position: | chr19:35081995-35081800 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 1-185 |
| Cow position: | chr19:41204461-41204656 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 1-187 |
| Cow position: | chr19:22513007-22512813 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-187 |
| Cow position: | chr19:39924101-39923905 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 52, 151 |
| Conread position: | 1-187 |
| Cow position: | chr19:39976220-39976417 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-188 |
| Cow position: | chr19:2065371-2065176 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 52, 144 |
| Conread position: | 1-194 |
| Cow position: | chr19:15720149-15720350 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 130 |
| Conread position: | 1-196 |
| Cow position: | chr19:50561826-50561620 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 164 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-200 |
| Cow position: | chr19:345158-344946 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-200 |
| Cow position: | chr19:34905559-34905772 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-200 |
| Cow position: | chr19:39750915-39750712 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 80 |
| Conread position: | 1-201 |
| Cow position: | chr19:1169156-1169369 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 51, 159 |
| Conread position: | 1-201 |
| Cow position: | chr19:5733257-5733043 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-201 |
| Cow position: | chr19:12551336-12551544 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-201 |
| Cow position: | chr19:23383205-23382991 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-201 |
| Cow position: | chr19:40015827-40016040 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 52, 174 |
| Conread position: | 1-202 |
| Cow position: | chr19:2588950-2588733 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 52, 180 |
| Conread position: | 1-202 |
| Cow position: | chr19:4447978-4447769 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 52, 182 |
| Conread position: | 1-202 |
| Cow position: | chr19:7053889-7054096 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 52, 174 |
| Conread position: | 1-202 |
| Cow position: | chr19:9542937-9543155 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-202 |
| Cow position: | chr19:17883701-17883490 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-202 |
| Cow position: | chr19:18786893-18787109 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 49, 192 |
| Conread position: | 1-202 |
| Cow position: | chr19:29367294-29367079 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-202 |
| Cow position: | chr19:33932705-33932916 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 52, 188 |
| Conread position: | 1-202 |
| Cow position: | chr19:55421799-55421591 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 52, 176 |
| Conread position: | 1-220 |
| Cow position: | chr19:176242-176010 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 51, 174 |
| Conread position: | 1-220 |
| Cow position: | chr19:14581048-14580813 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 52, 174 |
| Conread position: | 1-220 |
| Cow position: | chr19:25085959-25085724 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 52, 165 |
| Conread position: | 1-220 |
| Cow position: | chr19:54542228-54542460 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 51, 83 |
| Conread position: | 1-221 |
| Cow position: | chr19:930585-930352 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 52, 216 |
| Conread position: | 1-221 |
| Cow position: | chr19:12652641-12652408 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 183 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 52, 216 |
| Conread position: | 1-221 |
| Cow position: | chr19:14158171-14157941 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 181 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 52, 213 |
| Conread position: | 1-221 |
| Cow position: | chr19:15797186-15796957 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 52, 187 |
| Conread position: | 1-221 |
| Cow position: | chr19:30237470-30237241 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 52, 151 |
| Conread position: | 1-221 |
| Cow position: | chr19:30518499-30518266 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 216 |
| Conread position: | 1-221 |
| Cow position: | chr19:33877182-33876949 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 52, 216 |
| Conread position: | 1-221 |
| Cow position: | chr19:33945332-33945099 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 183 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 52, 216 |
| Conread position: | 1-221 |
| Cow position: | chr19:36352034-36351801 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 52, 216 |
| Conread position: | 1-221 |
| Cow position: | chr19:40790592-40790825 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 183 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 52, 216 |
| Conread position: | 1-221 |
| Cow position: | chr19:40848724-40848956 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 183 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 51, 69 |
| Conread position: | 1-222 |
| Cow position: | chr19:12777007-12776773 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 52, 216 |
| Conread position: | 1-223 |
| Cow position: | chr19:28597136-28596902 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 47, 78 |
| Conread position: | 1-226 |
| Cow position: | chr19:208261-208021 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 2-144 |
| Cow position: | chr19:8567125-8566972 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-185 |
| Cow position: | chr19:3086554-3086363 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 154 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-185 |
| Cow position: | chr19:10196173-10195984 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 2-185 |
| Cow position: | chr19:10613990-10613799 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 2-185 |
| Cow position: | chr19:20928941-20928747 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 2-185 |
| Cow position: | chr19:24734902-24734708 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-185 |
| Cow position: | chr19:30515277-30515471 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-185 |
| Cow position: | chr19:41223898-41224092 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 2-185 |
| Cow position: | chr19:48626820-48626630 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 2-201 |
| Cow position: | chr19:48534486-48534277 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 51, 186 |
| Conread position: | 2-204 |
| Cow position: | chr19:2249719-2249935 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 3-205 |
| Cow position: | chr19:41945814-41945600 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 47, 171 |
| Conread position: | 3-221 |
| Cow position: | chr19:39077197-39076971 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 139 |
| Conread position: | 3-221 |
| Cow position: | chr19:50833143-50833370 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 50, 185 |
| Conread position: | 4-218 |
| Cow position: | chr19:18152661-18152458 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 104, 25 |
Show alignments to all cow chromosomes.