Cow genome map
| Conread name: | Tra1-TCH01C100019 |
| Conread position: | 1-107 |
| Cow position: | chr20:10919826-10919939 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-125 |
| Cow position: | chr20:13269100-13268969 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-125 |
| Cow position: | chr20:39270011-39270143 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 20 |
| Conread position: | 1-138 |
| Cow position: | chr20:15539574-15539722 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 1-139 |
| Cow position: | chr20:13493225-13493076 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-149 |
| Cow position: | chr20:5634602-5634760 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-158 |
| Cow position: | chr20:11888262-11888430 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-158 |
| Cow position: | chr20:23871331-23871501 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-159 |
| Cow position: | chr20:25844579-25844746 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 52, 84 |
| Conread position: | 1-161 |
| Cow position: | chr20:3294272-3294443 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-175 |
| Cow position: | chr20:5086706-5086521 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 1-179 |
| Cow position: | chr20:28956213-28956402 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-183 |
| Cow position: | chr20:5786104-5785911 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-184 |
| Cow position: | chr20:4621881-4622072 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 52, 105 |
| Conread position: | 1-184 |
| Cow position: | chr20:12176761-12176955 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 1-185 |
| Cow position: | chr20:6135262-6135457 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-185 |
| Cow position: | chr20:7081087-7081282 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 1-185 |
| Cow position: | chr20:8247261-8247456 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 1-185 |
| Cow position: | chr20:16558803-16558998 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 1-185 |
| Cow position: | chr20:24543065-24542870 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-185 |
| Cow position: | chr20:24567543-24567738 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-185 |
| Cow position: | chr20:24620929-24620734 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 1-185 |
| Cow position: | chr20:29284879-29285074 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-185 |
| Cow position: | chr20:32451626-32451821 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 1-185 |
| Cow position: | chr20:37154237-37154432 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-185 |
| Cow position: | chr20:41975537-41975342 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-187 |
| Cow position: | chr20:6423464-6423278 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 52, 78 |
| Conread position: | 1-187 |
| Cow position: | chr20:13505853-13506047 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 52, 78 |
| Conread position: | 1-187 |
| Cow position: | chr20:15235329-15235143 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 45, 122 |
| Conread position: | 1-187 |
| Cow position: | chr20:16516053-16515855 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-187 |
| Cow position: | chr20:19441648-19441451 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-187 |
| Cow position: | chr20:35843698-35843893 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 40, 141 |
| Conread position: | 1-187 |
| Cow position: | chr20:39391413-39391610 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-192 |
| Cow position: | chr20:37271995-37271799 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 95 |
| Conread position: | 1-201 |
| Cow position: | chr20:5538873-5538659 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-201 |
| Cow position: | chr20:13766611-13766397 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-201 |
| Cow position: | chr20:23802879-23802665 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 169 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-201 |
| Cow position: | chr20:28443623-28443834 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-201 |
| Cow position: | chr20:35094252-35094038 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-202 |
| Cow position: | chr20:3781972-3782189 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-202 |
| Cow position: | chr20:28113705-28113496 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-202 |
| Cow position: | chr20:34776620-34776409 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 52, 187 |
| Conread position: | 1-202 |
| Cow position: | chr20:40588311-40588099 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 52, 84 |
| Conread position: | 1-202 |
| Cow position: | chr20:40781468-40781252 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-218 |
| Cow position: | chr20:40058232-40058010 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 52, 97 |
| Conread position: | 1-220 |
| Cow position: | chr20:10035022-10035254 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 48, 159 |
| Conread position: | 1-221 |
| Cow position: | chr20:6550269-6550502 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 52, 216 |
| Conread position: | 1-221 |
| Cow position: | chr20:7597133-7597366 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 52, 216 |
| Conread position: | 1-221 |
| Cow position: | chr20:12567598-12567824 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 175 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 52, 75 |
| Conread position: | 1-221 |
| Cow position: | chr20:15089644-15089876 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 52, 177 |
| Conread position: | 1-221 |
| Cow position: | chr20:15295746-15295513 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 48, 216 |
| Conread position: | 1-221 |
| Cow position: | chr20:21019054-21018812 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 47, 230 |
| Conread position: | 1-221 |
| Cow position: | chr20:22209350-22209117 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 52, 177 |
| Conread position: | 1-221 |
| Cow position: | chr20:27877212-27876979 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 52, 216 |
| Conread position: | 1-221 |
| Cow position: | chr20:40423605-40423834 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 52, 176 |
| Conread position: | 1-222 |
| Cow position: | chr20:10288412-10288181 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 45, 103 |
| Conread position: | 2-150 |
| Cow position: | chr20:4579314-4579469 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 2-159 |
| Cow position: | chr20:36424209-36424041 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 2-170 |
| Cow position: | chr20:26737722-26737901 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 2-170 |
| Cow position: | chr20:33304000-33304179 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-185 |
| Cow position: | chr20:1024525-1024719 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-185 |
| Cow position: | chr20:5503013-5503213 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-185 |
| Cow position: | chr20:8446140-8445946 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 2-185 |
| Cow position: | chr20:13303571-13303764 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 51, 148 |
| Conread position: | 2-185 |
| Cow position: | chr20:17863852-17863658 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-185 |
| Cow position: | chr20:22049094-22048900 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 2-185 |
| Cow position: | chr20:22060450-22060644 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 2-185 |
| Cow position: | chr20:25122509-25122703 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 2-185 |
| Cow position: | chr20:28324206-28324012 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 2-185 |
| Cow position: | chr20:30384518-30384711 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-185 |
| Cow position: | chr20:31784585-31784779 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-185 |
| Cow position: | chr20:35169772-35169578 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-185 |
| Cow position: | chr20:36310775-36310969 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 2-185 |
| Cow position: | chr20:36854469-36854276 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 2-185 |
| Cow position: | chr20:38956350-38956544 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 2-185 |
| Cow position: | chr20:40503994-40504188 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-195 |
| Cow position: | chr20:12695037-12694835 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 162 |
| Conread position: | 2-201 |
| Cow position: | chr20:34458546-34458755 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 51, 110 |
| Conread position: | 3-185 |
| Cow position: | chr20:31505060-31504867 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 3-218 |
| Cow position: | chr20:12333395-12333173 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 44, 119 |
| Conread position: | 7-126 |
| Cow position: | chr20:9589736-9589608 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
Show alignments to all cow chromosomes.