Cow genome map

Conread name: Tra1-TCH01C100019

Conread position: 1-101
Cow position: chr21:24130603-24130499 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 88
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 1-121
Cow position: chr21:750247-750120 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 1-127
Cow position: chr21:44826358-44826491 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 1-138
Cow position: chr21:33107655-33107803 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 120
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 16, 20

Conread position: 1-150
Cow position: chr21:36780964-36780804 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 1-174
Cow position: chr21:45842164-45842348 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 1-175
Cow position: chr21:10436679-10436504 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 144
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 107, 57

Conread position: 1-176
Cow position: chr21:10571109-10570917 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 150
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 1-180
Cow position: chr21:30296457-30296268 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 144
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 52, 174

Conread position: 1-181
Cow position: chr21:4718981-4719172 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 153
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 16, 20

Conread position: 1-181
Cow position: chr21:37924015-37923824 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 150
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 52, 0

Conread position: 1-183
Cow position: chr21:3586061-3586255 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 48, 166

Conread position: 1-184
Cow position: chr21:46830726-46830920 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 1-185
Cow position: chr21:4898134-4898329 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 51, 0

Conread position: 1-185
Cow position: chr21:7038354-7038549 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr21:7047346-7047538 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 156
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr21:7597432-7597627 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 154
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr21:11663405-11663600 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr21:16575608-16575803 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 155
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr21:19351022-19351217 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr21:20262827-20263023 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 151
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 50, 0

Conread position: 1-185
Cow position: chr21:23341490-23341295 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 157
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr21:26854854-26855049 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 153
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr21:41795886-41796081 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 157
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr21:47168800-47168604 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 152
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr21:48273359-48273553 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 155
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 16, 20

Conread position: 1-186
Cow position: chr21:33964893-33965088 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 52, 0

Conread position: 1-187
Cow position: chr21:5009630-5009827 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 154
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 52, 0

Conread position: 1-187
Cow position: chr21:9209146-9208951 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 156
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 52, 151

Conread position: 1-187
Cow position: chr21:12153651-12153456 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 150
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 47, 0

Conread position: 1-187
Cow position: chr21:27619681-27619878 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 153
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 52, 0

Conread position: 1-187
Cow position: chr21:30571241-30571438 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 153
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 52, 0

Conread position: 1-191
Cow position: chr21:29484474-29484273 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 159
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 52, 160

Conread position: 1-195
Cow position: chr21:28908302-28908506 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 158
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 52, 200

Conread position: 1-196
Cow position: chr21:39508131-39508332 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 50, 155

Conread position: 1-201
Cow position: chr21:45554-45336 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 1-201
Cow position: chr21:3496667-3496881 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 52, 0

Conread position: 1-201
Cow position: chr21:4541348-4541562 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 170
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 52, 0

Conread position: 1-201
Cow position: chr21:16890005-16890215 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 162
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 52, 187

Conread position: 1-201
Cow position: chr21:19626871-19627085 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 165
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 52, 0

Conread position: 1-201
Cow position: chr21:33934075-33934289 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 167
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 52, 0

Conread position: 1-201
Cow position: chr21:42443098-42443309 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 166
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 52, 0

Conread position: 1-201
Cow position: chr21:42558613-42558399 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 168
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 52, 180

Conread position: 1-201
Cow position: chr21:47429179-47428968 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 52, 46

Conread position: 1-201
Cow position: chr21:47978106-47977892 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 52, 0

Conread position: 1-202
Cow position: chr21:16278236-16278025 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 52, 71

Conread position: 1-202
Cow position: chr21:28028471-28028252 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 166
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 52, 0

Conread position: 1-212
Cow position: chr21:18289173-18288952 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 51, 187

Conread position: 1-218
Cow position: chr21:44761843-44762075 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 180
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 45, 218

Conread position: 1-220
Cow position: chr21:2904954-2905187 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 177
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 55, 0

Conread position: 1-220
Cow position: chr21:12802274-12802504 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 171
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 54, 101

Conread position: 1-221
Cow position: chr21:1196376-1196143 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 179
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 52, 214

Conread position: 1-221
Cow position: chr21:3782611-3782378 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 176
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 52, 216

Conread position: 1-221
Cow position: chr21:5020977-5020748 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 176
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 52, 187

Conread position: 1-221
Cow position: chr21:10854095-10853871 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 169
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 48, 75

Conread position: 1-221
Cow position: chr21:13111288-13111516 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 176
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 52, 211

Conread position: 1-221
Cow position: chr21:33316527-33316760 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 182
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 52, 216

Conread position: 1-221
Cow position: chr21:33832138-33832370 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 172
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 52, 215

Conread position: 1-221
Cow position: chr21:43403599-43403832 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 184
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 52, 216

Conread position: 1-226
Cow position: chr21:28810745-28810980 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 173
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 52, 0

Conread position: 2-149
Cow position: chr21:27521858-27522016 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 129
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 2-150
Cow position: chr21:10075426-10075585 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 51, 0

Conread position: 2-180
Cow position: chr21:22464027-22463841 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 143
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 51, 0

Conread position: 2-181
Cow position: chr21:11760134-11760317 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 148
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 51, 100

Conread position: 2-181
Cow position: chr21:13735324-13735514 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 2-181
Cow position: chr21:18574352-18574162 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 147
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 51, 0

Conread position: 2-181
Cow position: chr21:33770515-33770325 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 147
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr21:7524955-7524761 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 154
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr21:11144012-11144206 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 150
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr21:11292544-11292350 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 152
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr21:19614082-19613887 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 151
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr21:21103556-21103362 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 152
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 50, 0

Conread position: 2-185
Cow position: chr21:25480109-25479915 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr21:25598502-25598308 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr21:26756885-26757079 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 154
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr21:30298317-30298123 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 154
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr21:30655477-30655283 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 155
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr21:31039997-31040191 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 151
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr21:32238177-32237983 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr21:33709662-33709856 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 153
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr21:34181503-34181309 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 149
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr21:36892394-36892588 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 151
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr21:39469927-39470120 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 15, 19

Conread position: 2-186
Cow position: chr21:25738362-25738557 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 155
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 15, 19

Conread position: 2-187
Cow position: chr21:38450174-38450362 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 51, 116

Conread position: 2-201
Cow position: chr21:39486436-39486649 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 162
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 51, 0

Conread position: 2-220
Cow position: chr21:48196277-48196048 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 45, 95

Conread position: 2-221
Cow position: chr21:36534376-36534602 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 15, 19

Conread position: 3-201
Cow position: chr21:36506005-36506214 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 161
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 49, 0

Conread position: 3-220
Cow position: chr21:31512435-31512665 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 177
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 50, 101

Conread position: 5-181
Cow position: chr21:1058306-1058118 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 148
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 48, 181

Conread position: 5-181
Cow position: chr21:2366852-2366665 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 144
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 45, 0

Conread position: 5-220
Cow position: chr21:471124-470898 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 164
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 48, 88

Show alignments to all cow chromosomes.