Cow genome map
| Conread name: | Tra1-TCH01C100019 |
| Conread position: | 1-125 |
| Cow position: | chr23:1428253-1428121 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-151 |
| Cow position: | chr23:12864347-12864186 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-160 |
| Cow position: | chr23:11459583-11459753 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-161 |
| Cow position: | chr23:7174180-7174012 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-171 |
| Cow position: | chr23:977390-977571 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 1-174 |
| Cow position: | chr23:29459622-29459799 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 1-178 |
| Cow position: | chr23:6593269-6593457 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-179 |
| Cow position: | chr23:11128670-11128484 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 52, 110 |
| Conread position: | 1-182 |
| Cow position: | chr23:770812-770997 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-182 |
| Cow position: | chr23:40890433-40890240 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-185 |
| Cow position: | chr23:610360-610164 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 52, 149 |
| Conread position: | 1-185 |
| Cow position: | chr23:2723405-2723210 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 1-185 |
| Cow position: | chr23:3549536-3549731 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 1-185 |
| Cow position: | chr23:4487309-4487504 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-185 |
| Cow position: | chr23:4581685-4581490 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 1-185 |
| Cow position: | chr23:14215575-14215770 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-185 |
| Cow position: | chr23:19316552-19316747 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 1-185 |
| Cow position: | chr23:24120214-24120019 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-185 |
| Cow position: | chr23:31584961-31584766 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-185 |
| Cow position: | chr23:38934575-38934770 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-186 |
| Cow position: | chr23:35284861-35285057 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-187 |
| Cow position: | chr23:4636692-4636889 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-187 |
| Cow position: | chr23:21351296-21351493 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-187 |
| Cow position: | chr23:36308864-36308666 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 52, 100 |
| Conread position: | 1-187 |
| Cow position: | chr23:40553482-40553683 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-192 |
| Cow position: | chr23:10554564-10554767 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-200 |
| Cow position: | chr23:7293839-7293633 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 52, 184 |
| Conread position: | 1-201 |
| Cow position: | chr23:1959786-1959572 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-201 |
| Cow position: | chr23:11344152-11343942 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 52, 187 |
| Conread position: | 1-201 |
| Cow position: | chr23:11376659-11376872 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 52, 100 |
| Conread position: | 1-201 |
| Cow position: | chr23:15180615-15180403 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 52, 146 |
| Conread position: | 1-201 |
| Cow position: | chr23:28222360-28222147 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-201 |
| Cow position: | chr23:28915987-28915773 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-201 |
| Cow position: | chr23:36027593-36027807 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-201 |
| Cow position: | chr23:37198852-37199065 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 52, 106 |
| Conread position: | 1-202 |
| Cow position: | chr23:1545399-1545193 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 47, 158 |
| Conread position: | 1-202 |
| Cow position: | chr23:8708050-8707835 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-202 |
| Cow position: | chr23:40773987-40773774 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-215 |
| Cow position: | chr23:26318869-26318660 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 47, 78 |
| Conread position: | 1-218 |
| Cow position: | chr23:24098785-24098557 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 52, 109 |
| Conread position: | 1-219 |
| Cow position: | chr23:361983-362215 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-219 |
| Cow position: | chr23:17846648-17846418 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 45, 173 |
| Conread position: | 1-220 |
| Cow position: | chr23:5721539-5721771 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-221 |
| Cow position: | chr23:2721376-2721148 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 52, 99 |
| Conread position: | 1-221 |
| Cow position: | chr23:4892356-4892122 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 52, 216 |
| Conread position: | 1-221 |
| Cow position: | chr23:11782445-11782212 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 180 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 52, 216 |
| Conread position: | 1-221 |
| Cow position: | chr23:15529244-15529013 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 52, 110 |
| Conread position: | 1-221 |
| Cow position: | chr23:20152561-20152794 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 52, 216 |
| Conread position: | 1-221 |
| Cow position: | chr23:30622841-30623075 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 52, 217 |
| Conread position: | 1-221 |
| Cow position: | chr23:30633932-30634168 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 52, 219 |
| Conread position: | 1-221 |
| Cow position: | chr23:35937471-35937244 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 52, 43 |
| Conread position: | 2-121 |
| Cow position: | chr23:35683275-35683402 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-150 |
| Cow position: | chr23:21009344-21009185 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-150 |
| Cow position: | chr23:26932645-26932805 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-185 |
| Cow position: | chr23:573609-573800 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 51, 102 |
| Conread position: | 2-185 |
| Cow position: | chr23:671828-671636 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 51, 109 |
| Conread position: | 2-185 |
| Cow position: | chr23:954142-954336 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-185 |
| Cow position: | chr23:1113610-1113416 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-185 |
| Cow position: | chr23:5458397-5458203 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-185 |
| Cow position: | chr23:9267204-9267398 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 2-185 |
| Cow position: | chr23:10874004-10874198 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 2-185 |
| Cow position: | chr23:10936639-10936832 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 2-185 |
| Cow position: | chr23:15569220-15569026 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 2-185 |
| Cow position: | chr23:19056703-19056897 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-185 |
| Cow position: | chr23:25352018-25351824 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-185 |
| Cow position: | chr23:28084813-28084619 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-185 |
| Cow position: | chr23:39745518-39745324 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 2-188 |
| Cow position: | chr23:4544659-4544856 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 2-201 |
| Cow position: | chr23:4100536-4100323 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-201 |
| Cow position: | chr23:4267094-4266881 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 3-168 |
| Cow position: | chr23:10424557-10424390 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 101, 43 |
| Conread position: | 3-183 |
| Cow position: | chr23:33233668-33233855 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 50, 101 |
| Conread position: | 3-187 |
| Cow position: | chr23:1535773-1535581 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 50, 157 |
| Conread position: | 3-187 |
| Cow position: | chr23:29446298-29446487 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 40, 97 |
| Conread position: | 3-220 |
| Cow position: | chr23:19493510-19493275 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 50, 178 |
Show alignments to all cow chromosomes.