Cow genome map
| Conread name: | Tra1-TCH01C100019 |
| Conread position: | 1-125 |
| Cow position: | chr25:33466414-33466282 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-150 |
| Cow position: | chr25:13967513-13967672 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-160 |
| Cow position: | chr25:10158190-10158020 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 1-161 |
| Cow position: | chr25:34502238-34502409 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-166 |
| Cow position: | chr25:36765852-36766019 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 52, 111 |
| Conread position: | 1-167 |
| Cow position: | chr25:11584957-11584782 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-175 |
| Cow position: | chr25:15618146-15617962 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 52, 142 |
| Conread position: | 1-181 |
| Cow position: | chr25:13332862-13332673 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 52, 172 |
| Conread position: | 1-182 |
| Cow position: | chr25:18237262-18237071 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-185 |
| Cow position: | chr25:8935245-8935050 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 1-185 |
| Cow position: | chr25:13955941-13956136 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-185 |
| Cow position: | chr25:17210686-17210880 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-185 |
| Cow position: | chr25:18490520-18490328 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-185 |
| Cow position: | chr25:19336878-19337073 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-185 |
| Cow position: | chr25:23601495-23601689 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 1-185 |
| Cow position: | chr25:34164113-34164308 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-187 |
| Cow position: | chr25:18189930-18190126 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 52, 174 |
| Conread position: | 1-187 |
| Cow position: | chr25:18330327-18330523 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 52, 71 |
| Conread position: | 1-200 |
| Cow position: | chr25:4522370-4522575 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 40, 183 |
| Conread position: | 1-200 |
| Cow position: | chr25:29802296-29802509 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-201 |
| Cow position: | chr25:9595762-9595551 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-201 |
| Cow position: | chr25:18269906-18269712 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 52, 75 |
| Conread position: | 1-201 |
| Cow position: | chr25:18323910-18324122 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-201 |
| Cow position: | chr25:25510338-25510124 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-201 |
| Cow position: | chr25:26780637-26780851 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-201 |
| Cow position: | chr25:27145871-27145660 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 1-202 |
| Cow position: | chr25:2135808-2135593 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-202 |
| Cow position: | chr25:24669919-24670130 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-202 |
| Cow position: | chr25:29216684-29216895 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 51, 126 |
| Conread position: | 1-217 |
| Cow position: | chr25:17658061-17657839 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 51, 187 |
| Conread position: | 1-218 |
| Cow position: | chr25:14954598-14954818 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 107, 206 |
| Conread position: | 1-218 |
| Cow position: | chr25:26282473-26282243 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 52, 216 |
| Conread position: | 1-218 |
| Cow position: | chr25:35567441-35567667 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 52, 187 |
| Conread position: | 1-218 |
| Cow position: | chr25:37593852-37593621 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 52, 217 |
| Conread position: | 1-220 |
| Cow position: | chr25:11662335-11662569 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 51, 65 |
| Conread position: | 1-220 |
| Cow position: | chr25:25826902-25826666 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-220 |
| Cow position: | chr25:41121451-41121220 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-221 |
| Cow position: | chr25:13960508-13960278 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 180 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 52, 213 |
| Conread position: | 1-221 |
| Cow position: | chr25:17994849-17995078 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 52, 90 |
| Conread position: | 1-221 |
| Cow position: | chr25:18886035-18886268 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 52, 216 |
| Conread position: | 1-221 |
| Cow position: | chr25:24654726-24654958 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 52, 109 |
| Conread position: | 1-221 |
| Cow position: | chr25:27231796-27231571 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 149 |
| Conread position: | 1-221 |
| Cow position: | chr25:35625790-35626002 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 104, 43 |
| Conread position: | 1-221 |
| Cow position: | chr25:39386386-39386613 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 52, 210 |
| Conread position: | 2-150 |
| Cow position: | chr25:22198029-22197870 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 2-151 |
| Cow position: | chr25:7068968-7068808 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 2-161 |
| Cow position: | chr25:16308744-16308913 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-185 |
| Cow position: | chr25:12318376-12318570 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-185 |
| Cow position: | chr25:15429232-15429426 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 2-185 |
| Cow position: | chr25:17808331-17808525 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 2-185 |
| Cow position: | chr25:19139124-19139318 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-185 |
| Cow position: | chr25:29525420-29525613 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 15, 21 |
| Conread position: | 2-185 |
| Cow position: | chr25:34343462-34343654 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 51, 115 |
| Conread position: | 2-185 |
| Cow position: | chr25:35554116-35553922 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-185 |
| Cow position: | chr25:36127460-36127653 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-187 |
| Cow position: | chr25:14755967-14756163 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-201 |
| Cow position: | chr25:9413791-9413582 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 51, 171 |
| Conread position: | 2-201 |
| Cow position: | chr25:34013311-34013519 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 51, 115 |
| Conread position: | 2-201 |
| Cow position: | chr25:35754799-35755010 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 51, 83 |
| Conread position: | 3-175 |
| Cow position: | chr25:12081910-12082089 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 50, 157 |
| Conread position: | 3-185 |
| Cow position: | chr25:21120760-21120563 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 6-135 |
| Cow position: | chr25:11437339-11437476 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 47, 131 |
Show alignments to all cow chromosomes.