Cow genome map

Conread name: Tra1-TCH01C100019

Conread position: 1-134
Cow position: chr28:27754662-27754518 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 1-142
Cow position: chr28:8111039-8110886 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 1-149
Cow position: chr28:21354675-21354516 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 52, 0

Conread position: 1-150
Cow position: chr28:29682943-29682784 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 129
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 16, 20

Conread position: 1-161
Cow position: chr28:15605229-15605056 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 52, 0

Conread position: 1-167
Cow position: chr28:26781534-26781357 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 137
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 52, 0

Conread position: 1-172
Cow position: chr28:1811290-1811472 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 144
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 52, 0

Conread position: 1-175
Cow position: chr28:21767433-21767618 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 152
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 52, 0

Conread position: 1-176
Cow position: chr28:1214106-1214284 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 141
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 107, 44

Conread position: 1-180
Cow position: chr28:5361564-5361751 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 97

Conread position: 1-180
Cow position: chr28:20934693-20934883 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 52, 0

Conread position: 1-183
Cow position: chr28:21380196-21380006 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 147
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 52, 156

Conread position: 1-183
Cow position: chr28:30870777-30870587 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 59, 159

Conread position: 1-184
Cow position: chr28:21363222-21363031 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 152
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 52, 159

Conread position: 1-185
Cow position: chr28:7336692-7336494 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr28:7830267-7830069 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 150
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr28:9710448-9710643 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 155
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr28:10303543-10303348 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 151
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr28:12701573-12701378 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 153
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr28:23309630-23309825 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 154
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr28:23477920-23478115 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 157
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr28:24993193-24992998 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 153
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr28:25829101-25828906 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 151
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr28:32589405-32589210 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 156
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr28:34581647-34581842 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 151
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr28:34731437-34731242 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 150
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 52, 0

Conread position: 1-187
Cow position: chr28:15965888-15966085 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 154
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 51, 0

Conread position: 1-187
Cow position: chr28:18559270-18559467 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 153
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 51, 0

Conread position: 1-187
Cow position: chr28:19552681-19552872 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 153
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 52, 160

Conread position: 1-187
Cow position: chr28:26922927-26923120 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 154
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 52, 164

Conread position: 1-187
Cow position: chr28:34082564-34082761 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 153
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 51, 0

Conread position: 1-188
Cow position: chr28:2422415-2422217 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 153
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 52, 0

Conread position: 1-195
Cow position: chr28:12406471-12406679 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 169
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 52, 0

Conread position: 1-196
Cow position: chr28:9184735-9184938 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 158
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 52, 172

Conread position: 1-200
Cow position: chr28:3745655-3745448 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 157
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 52, 98

Conread position: 1-200
Cow position: chr28:12650924-12650710 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 172
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 47, 161

Conread position: 1-201
Cow position: chr28:786364-786153 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 167
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 52, 172

Conread position: 1-201
Cow position: chr28:1957069-1956855 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 165
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 52, 0

Conread position: 1-201
Cow position: chr28:5111018-5111232 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 172
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 48, 0

Conread position: 1-201
Cow position: chr28:5748000-5748214 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 167
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 52, 0

Conread position: 1-201
Cow position: chr28:6047497-6047283 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 170
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 52, 0

Conread position: 1-201
Cow position: chr28:6959937-6959721 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 168
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 52, 0

Conread position: 1-201
Cow position: chr28:16597853-16597639 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 163
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 52, 0

Conread position: 1-201
Cow position: chr28:28723924-28723715 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 161
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 52, 110

Conread position: 1-201
Cow position: chr28:30098582-30098368 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 172
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 52, 0

Conread position: 1-202
Cow position: chr28:1837454-1837241 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 34, 160

Conread position: 1-202
Cow position: chr28:5804969-5804757 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 162
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 52, 0

Conread position: 1-202
Cow position: chr28:7005734-7005519 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 173
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 52, 0

Conread position: 1-202
Cow position: chr28:10280535-10280327 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 42, 127

Conread position: 1-202
Cow position: chr28:11787256-11787468 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 167
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 52, 0

Conread position: 1-202
Cow position: chr28:22279733-22279945 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 162
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 52, 184

Conread position: 1-202
Cow position: chr28:25424891-25425100 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 51, 109

Conread position: 1-202
Cow position: chr28:29035945-29036161 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 171
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 52, 0

Conread position: 1-202
Cow position: chr28:31842232-31842444 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 164
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 52, 206

Conread position: 1-220
Cow position: chr28:1508582-1508352 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 181
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 52, 179

Conread position: 1-220
Cow position: chr28:10589553-10589781 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 52, 142

Conread position: 1-220
Cow position: chr28:19194224-19193992 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 179
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 52, 0

Conread position: 1-221
Cow position: chr28:3001160-3001386 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 174
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 51, 122

Conread position: 1-221
Cow position: chr28:12156385-12156152 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 182
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 52, 216

Conread position: 1-221
Cow position: chr28:18516439-18516672 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 181
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 52, 216

Conread position: 1-221
Cow position: chr28:19300726-19300502 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 175
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 52, 78

Conread position: 1-221
Cow position: chr28:24997205-24997436 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 174
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 52, 145

Conread position: 1-221
Cow position: chr28:30532291-30532521 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 177
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 52, 80

Conread position: 1-221
Cow position: chr28:33640275-33640041 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 178
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 47, 217

Conread position: 2-181
Cow position: chr28:34655789-34655598 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 149
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 51, 0

Conread position: 2-182
Cow position: chr28:6535092-6535283 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 151
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 51, 179

Conread position: 2-183
Cow position: chr28:12429908-12429719 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 147
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 51, 70

Conread position: 2-185
Cow position: chr28:2616119-2616313 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 154
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr28:5311645-5311839 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr28:6319446-6319640 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr28:6478923-6478729 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 153
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr28:7888380-7888574 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 153
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr28:9182574-9182380 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 150
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr28:9287688-9287882 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 152
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr28:10193330-10193524 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 151
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr28:10870794-10870600 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 156
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr28:12117535-12117729 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 13, 19

Conread position: 2-185
Cow position: chr28:12968503-12968697 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 153
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr28:15047913-15047719 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr28:19185928-19185734 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 154
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr28:22582486-22582292 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr28:27938525-27938331 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 151
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 15, 19

Conread position: 2-187
Cow position: chr28:28357080-28357275 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 154
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 15, 19

Conread position: 2-201
Cow position: chr28:1943591-1943804 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 165
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 51, 0

Conread position: 2-201
Cow position: chr28:17369758-17369545 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 163
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 51, 0

Conread position: 2-202
Cow position: chr28:22353816-22353608 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 51, 0

Conread position: 2-221
Cow position: chr28:30328221-30328456 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 174
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 51, 219

Conread position: 2-241
Cow position: chr28:16215433-16215686 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 180
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 50, 0

Conread position: 3-160
Cow position: chr28:28766449-28766613 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 3-173
Cow position: chr28:1537011-1536833 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 50, 0

Conread position: 3-178
Cow position: chr28:3770541-3770726 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 49, 42

Conread position: 3-185
Cow position: chr28:7906843-7907035 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 153
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 50, 172

Conread position: 3-200
Cow position: chr28:615685-615474 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 50, 0

Conread position: 5-221
Cow position: chr28:13463665-13463436 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 181
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 48, 212

Show alignments to all cow chromosomes.