Cow genome map

Conread name: Tra1-TCH01C100019

Conread position: 1-121
Cow position: chr29:4201563-4201445 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 101
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 107, 55

Conread position: 1-121
Cow position: chr29:39047777-39047649 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 16, 20

Conread position: 1-125
Cow position: chr29:292164-292032 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 1-132
Cow position: chr29:5961953-5961812 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 117
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 1-134
Cow position: chr29:686747-686887 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 52, 129

Conread position: 1-135
Cow position: chr29:15767949-15768094 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 16, 20

Conread position: 1-171
Cow position: chr29:43517287-43517468 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 1-177
Cow position: chr29:40116999-40116812 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 144
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 52, 0

Conread position: 1-180
Cow position: chr29:17135220-17135026 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 145
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 1-180
Cow position: chr29:32732775-32732585 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 52, 0

Conread position: 1-181
Cow position: chr29:19891239-19891051 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 147
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 52, 0

Conread position: 1-181
Cow position: chr29:21199579-21199770 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 150
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 16, 20

Conread position: 1-182
Cow position: chr29:32800945-32800751 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 150
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 52, 0

Conread position: 1-183
Cow position: chr29:1332807-1332999 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 146
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 52, 0

Conread position: 1-183
Cow position: chr29:4519419-4519221 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 52, 104

Conread position: 1-183
Cow position: chr29:13058380-13058186 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 1-183
Cow position: chr29:21255639-21255444 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 52, 0

Conread position: 1-184
Cow position: chr29:4001862-4001667 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 1-184
Cow position: chr29:27702754-27702560 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 151
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr29:1479128-1478933 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 151
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr29:2461833-2461638 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 156
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr29:13623697-13623892 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr29:15719881-15719686 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 155
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr29:17458477-17458672 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 155
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr29:21167944-21167749 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 155
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr29:21474826-21474631 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr29:29565662-29565859 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 154
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr29:32298401-32298209 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 153
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr29:32329583-32329778 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 156
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 16, 20

Conread position: 1-185
Cow position: chr29:32560340-32560535 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 52, 0

Conread position: 1-185
Cow position: chr29:35955648-35955842 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 151
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 49, 0

Conread position: 1-186
Cow position: chr29:406818-407002 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 154
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 52, 122

Conread position: 1-186
Cow position: chr29:19857134-19856938 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 159
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 52, 177

Conread position: 1-200
Cow position: chr29:4480718-4480926 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 157
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 44, 186

Conread position: 1-201
Cow position: chr29:6879258-6879472 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 164
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 52, 0

Conread position: 1-201
Cow position: chr29:7811520-7811733 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 163
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 52, 43

Conread position: 1-201
Cow position: chr29:8934733-8934522 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 169
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 52, 145

Conread position: 1-201
Cow position: chr29:19514662-19514876 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 168
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 52, 0

Conread position: 1-201
Cow position: chr29:32543815-32543600 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 168
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 45, 102

Conread position: 1-202
Cow position: chr29:7724338-7724127 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 52, 174

Conread position: 1-202
Cow position: chr29:27814452-27814249 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 161
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 49, 162

Conread position: 1-202
Cow position: chr29:29056625-29056420 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 49, 164

Conread position: 1-202
Cow position: chr29:45650874-45651083 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 157
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 52, 80

Conread position: 1-218
Cow position: chr29:2463237-2463463 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 51, 173

Conread position: 1-218
Cow position: chr29:45208176-45207948 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 177
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 52, 162

Conread position: 1-220
Cow position: chr29:4875461-4875695 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 179
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 50, 0

Conread position: 1-220
Cow position: chr29:7427464-7427698 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 179
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 52, 0

Conread position: 1-220
Cow position: chr29:7666586-7666812 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 164
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 52, 173

Conread position: 1-220
Cow position: chr29:12798261-12798027 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 178
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 52, 0

Conread position: 1-220
Cow position: chr29:16347888-16347656 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 181
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 52, 216

Conread position: 1-220
Cow position: chr29:19657558-19657325 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 180
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 52, 0

Conread position: 1-220
Cow position: chr29:34780308-34780541 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 178
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 52, 0

Conread position: 1-220
Cow position: chr29:36209372-36209138 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 174
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 52, 41

Conread position: 1-220
Cow position: chr29:40498203-40498432 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 172
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 52, 187

Conread position: 1-221
Cow position: chr29:528843-529073 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 213

Conread position: 1-221
Cow position: chr29:2103518-2103286 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 181
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 52, 163

Conread position: 1-221
Cow position: chr29:5241072-5240839 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 184
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 52, 216

Conread position: 1-221
Cow position: chr29:5550447-5550214 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 177
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 52, 216

Conread position: 1-221
Cow position: chr29:10820038-10820271 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 178
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 52, 216

Conread position: 1-221
Cow position: chr29:14207891-14208124 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 182
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 52, 216

Conread position: 1-221
Cow position: chr29:26161153-26161391 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 178
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 45, 221

Conread position: 1-221
Cow position: chr29:28696704-28696935 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 184
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 44, 173

Conread position: 1-221
Cow position: chr29:34794181-34794415 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 184
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 52, 217

Conread position: 1-221
Cow position: chr29:35076807-35076568 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 187
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 52, 100

Conread position: 1-221
Cow position: chr29:45462908-45462675 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 216

Conread position: 1-223
Cow position: chr29:24728624-24728857 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 177
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 52, 214

Conread position: 2-152
Cow position: chr29:28990410-28990251 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 126
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 49, 0

Conread position: 2-181
Cow position: chr29:15570210-15570019 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 148
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr29:527161-527355 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 155
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr29:2401030-2400836 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 154
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr29:2521022-2520828 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 151
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr29:2950342-2950148 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 151
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr29:4611037-4610843 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 149
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr29:6413957-6413764 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 152
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr29:7848067-7847874 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 148
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 50, 0

Conread position: 2-185
Cow position: chr29:10031977-10032172 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 146
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr29:11119036-11119230 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 154
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr29:15698781-15698975 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr29:15755491-15755685 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 149
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr29:16185103-16185297 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 149
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr29:24982895-24983089 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 151
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr29:31765715-31765521 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr29:32292270-32292076 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 149
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr29:32516004-32515810 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 154
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 15, 19

Conread position: 2-185
Cow position: chr29:32556071-32556262 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 149
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr29:38271679-38271485 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 152
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 51, 0

Conread position: 2-185
Cow position: chr29:40157420-40157226 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 15, 19

Conread position: 2-194
Cow position: chr29:19523181-19522979 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 158
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 51, 178

Conread position: 2-201
Cow position: chr29:13585880-13585667 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 164
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 51, 0

Conread position: 2-201
Cow position: chr29:21429188-21429401 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 164
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 15, 19

Conread position: 2-202
Cow position: chr29:2624070-2624280 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 51, 198

Conread position: 3-167
Cow position: chr29:5977653-5977832 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 3-181
Cow position: chr29:7605076-7604886 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 3-219
Cow position: chr29:27823765-27823557 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 50, 35

Conread position: 5-202
Cow position: chr29:4367108-4366907 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 48, 154

Conread position: 5-221
Cow position: chr29:6935156-6934927 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 174
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 48, 211

Show alignments to all cow chromosomes.