Cow genome map
| Conread name: | Tra1-TCH01C100049 |
| Conread position: | 2-375 |
| Cow position: | chr1:58177985-58177613 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 54 |
| Conread position: | 2-377 |
| Cow position: | chr1:31417377-31416990 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 83 |
| Conread position: | 2-397 |
| Cow position: | chr1:29976427-29976041 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 85 |
| Conread position: | 2-398 |
| Cow position: | chr1:24652399-24652811 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 154 |
| Conread position: | 2-398 |
| Cow position: | chr1:33713190-33713619 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 2-398 |
| Cow position: | chr1:38419792-38420202 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 294 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 38, 249 |
| Conread position: | 4-295 |
| Cow position: | chr1:27541860-27542146 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 193, 43 |
| Conread position: | 4-388 |
| Cow position: | chr1:102433918-102433506 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 4-391 |
| Cow position: | chr1:22619515-22619133 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 290 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 69, 109 |
| Conread position: | 4-391 |
| Cow position: | chr1:55320954-55320535 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 140 |
| Conread position: | 4-394 |
| Cow position: | chr1:12061089-12060665 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 4-394 |
| Cow position: | chr1:28874204-28874608 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 258 |
| Conread position: | 4-394 |
| Cow position: | chr1:30533898-30533483 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 4-394 |
| Cow position: | chr1:33552050-33552470 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 4-394 |
| Cow position: | chr1:33852411-33852810 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 28 |
| Conread position: | 4-394 |
| Cow position: | chr1:56143215-56142803 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 160 |
| Conread position: | 4-394 |
| Cow position: | chr1:65387443-65387853 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 4-394 |
| Cow position: | chr1:91891998-91891578 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 4-398 |
| Cow position: | chr1:79635853-79635447 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 115 |
| Conread position: | 12-388 |
| Cow position: | chr1:99315381-99315748 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 254 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 29, 102 |
| Conread position: | 13-388 |
| Cow position: | chr1:91900156-91900557 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 347 |
| Conread position: | 19-394 |
| Cow position: | chr1:31364948-31364562 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 15 |
| Conread position: | 20-394 |
| Cow position: | chr1:32566783-32566383 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 213 |
| Conread position: | 20-394 |
| Cow position: | chr1:42737597-42737971 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 13 |
| Conread position: | 20-394 |
| Cow position: | chr1:62243506-62243112 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 33 |
| Conread position: | 20-394 |
| Cow position: | chr1:69404145-69404541 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 265 |
| Conread position: | 20-396 |
| Cow position: | chr1:32908974-32909361 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 138 |
| Conread position: | 35-394 |
| Cow position: | chr1:5503131-5503505 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 12 |
| Conread position: | 35-394 |
| Cow position: | chr1:25551124-25551505 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 279 |
| Conread position: | 35-394 |
| Cow position: | chr1:72081938-72082298 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 262 |
| Conread position: | 35-394 |
| Cow position: | chr1:72185720-72185339 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 35 |
| Conread position: | 35-394 |
| Cow position: | chr1:72984646-72985011 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 35 |
| Conread position: | 35-394 |
| Cow position: | chr1:73069905-73069517 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 86 |
| Conread position: | 47-397 |
| Cow position: | chr1:77110893-77110543 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 261 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 38, 98 |
| Conread position: | 47-398 |
| Cow position: | chr1:94660848-94661217 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 149 |
| Conread position: | 51-313 |
| Cow position: | chr1:11860067-11859798 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 221 |
| Conread position: | 106-394 |
| Cow position: | chr1:76620230-76619938 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 108 |
| Conread position: | 147-404 |
| Cow position: | chr1:87969598-87969861 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 85 |
| Conread position: | 159-398 |
| Cow position: | chr1:81862691-81862436 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 38, 164 |
| Conread position: | 167-398 |
| Cow position: | chr1:30074171-30074416 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 106 |
| Conread position: | 179-394 |
| Cow position: | chr1:49972852-49972632 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 175 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 18, 32 |
| Conread position: | 191-394 |
| Cow position: | chr1:21998089-21997876 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 195-398 |
| Cow position: | chr1:76095728-76095519 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 38, 10 |
| Conread position: | 619-859 |
| Cow position: | chr1:24652766-24653012 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 630-863 |
| Cow position: | chr1:67833617-67833384 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 25, 167 |
| Conread position: | 631-858 |
| Cow position: | chr1:82654177-82654404 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 26 |
| Conread position: | 631-863 |
| Cow position: | chr1:21088949-21089184 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 631-863 |
| Cow position: | chr1:21116324-21116084 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 15, 123 |
| Conread position: | 631-863 |
| Cow position: | chr1:82477496-82477729 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 26 |
| Conread position: | 632-863 |
| Cow position: | chr1:18964849-18964616 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 7 |
| Conread position: | 641-849 |
| Cow position: | chr1:50248181-50247972 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 67 |
| Conread position: | 641-859 |
| Cow position: | chr1:33897788-33898008 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-859 |
| Cow position: | chr1:56724672-56724892 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr1:17940242-17940018 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 204 |
| Conread position: | 641-863 |
| Cow position: | chr1:26584628-26584852 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 14, 138 |
| Conread position: | 641-863 |
| Cow position: | chr1:29035828-29036049 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 14, 105 |
| Conread position: | 641-863 |
| Cow position: | chr1:57423304-57423079 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr1:80357642-80357417 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr1:82565641-82565866 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 641-863 |
| Cow position: | chr1:86508380-86508142 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 642-863 |
| Cow position: | chr1:9378989-9378765 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 13, 201 |
| Conread position: | 646-863 |
| Cow position: | chr1:1828776-1828557 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 648-856 |
| Cow position: | chr1:38417667-38417868 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 71, 49 |
| Conread position: | 651-863 |
| Cow position: | chr1:18240685-18240480 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 170 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 654-859 |
| Cow position: | chr1:91900564-91900770 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 162 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 654-863 |
| Cow position: | chr1:71561203-71560992 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 657-863 |
| Cow position: | chr1:40966872-40966664 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 163 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 672-863 |
| Cow position: | chr1:30520349-30520542 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 679-863 |
| Cow position: | chr1:62921126-62921312 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 150 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 683-863 |
| Cow position: | chr1:45003771-45003947 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 30, 149 |
| Conread position: | 688-863 |
| Cow position: | chr1:98617212-98617036 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 31, 10 |
| Conread position: | 704-859 |
| Cow position: | chr1:101012592-101012436 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 725-863 |
| Cow position: | chr1:87435860-87435999 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 737-863 |
| Cow position: | chr1:5355310-5355183 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 740-863 |
| Cow position: | chr1:38476937-38477061 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 116, 0 |
Show alignments to all cow chromosomes.