Cow genome map
| Conread name: | Tra1-TCH01C100049 |
| Conread position: | 2-394 |
| Cow position: | chr10:57501962-57502362 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 277 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 72, 31 |
| Conread position: | 2-398 |
| Cow position: | chr10:2119872-2119441 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 338 |
| Conread position: | 2-398 |
| Cow position: | chr10:20375691-20375275 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 258 |
| Conread position: | 2-398 |
| Cow position: | chr10:39778968-39778561 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 374 |
| Conread position: | 2-398 |
| Cow position: | chr10:50135711-50136134 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 286 |
| Conread position: | 2-398 |
| Cow position: | chr10:53321254-53320829 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 290 |
| Conread position: | 3-183 |
| Cow position: | chr10:42752276-42752469 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 4-371 |
| Cow position: | chr10:40151097-40150733 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 36 |
| Conread position: | 4-390 |
| Cow position: | chr10:29845501-29845096 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 94 |
| Conread position: | 4-394 |
| Cow position: | chr10:14334702-14334271 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 4-394 |
| Cow position: | chr10:39878285-39877859 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 44, 84 |
| Conread position: | 4-394 |
| Cow position: | chr10:62407635-62407219 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 382 |
| Conread position: | 6-366 |
| Cow position: | chr10:58812608-58812237 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 45, 133 |
| Conread position: | 7-390 |
| Cow position: | chr10:20382863-20382471 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 62 |
| Conread position: | 14-394 |
| Cow position: | chr10:24976617-24976244 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 262 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 36, 119 |
| Conread position: | 14-397 |
| Cow position: | chr10:38849444-38849836 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 67 |
| Conread position: | 20-394 |
| Cow position: | chr10:126447-126848 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 106 |
| Conread position: | 20-398 |
| Cow position: | chr10:7280943-7280535 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 314 |
| Conread position: | 32-394 |
| Cow position: | chr10:21488145-21488519 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 329 |
| Conread position: | 35-391 |
| Cow position: | chr10:30684310-30683931 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 35-394 |
| Cow position: | chr10:22102419-22102797 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 305 |
| Conread position: | 35-394 |
| Cow position: | chr10:39040112-39039743 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 18 |
| Conread position: | 35-395 |
| Cow position: | chr10:1378688-1379060 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 81 |
| Conread position: | 46-391 |
| Cow position: | chr10:38722316-38722654 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 102, 65 |
| Conread position: | 47-394 |
| Cow position: | chr10:44708417-44708047 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 63 |
| Conread position: | 94-397 |
| Cow position: | chr10:47787930-47788243 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 61 |
| Conread position: | 171-398 |
| Cow position: | chr10:19706304-19706067 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 60, 17 |
| Conread position: | 174-394 |
| Cow position: | chr10:8291381-8291609 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 60, 5 |
| Conread position: | 191-398 |
| Cow position: | chr10:46196423-46196621 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 5, 18 |
| Conread position: | 221-394 |
| Cow position: | chr10:39439535-39439715 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 120, 20 |
| Conread position: | 631-863 |
| Cow position: | chr10:19841218-19841454 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 631-863 |
| Cow position: | chr10:25339636-25339870 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 631-863 |
| Cow position: | chr10:39778589-39778357 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 26 |
| Conread position: | 633-863 |
| Cow position: | chr10:41151192-41150960 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 25, 157 |
| Conread position: | 633-863 |
| Cow position: | chr10:41158955-41159188 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 641-863 |
| Cow position: | chr10:29109436-29109210 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr10:54930665-54930440 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 647-863 |
| Cow position: | chr10:31525293-31525503 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 67, 142 |
| Conread position: | 654-863 |
| Cow position: | chr10:41878488-41878699 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 657-863 |
| Cow position: | chr10:38343799-38343591 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 57, 40 |
| Conread position: | 663-855 |
| Cow position: | chr10:10172308-10172501 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 160 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 107 |
| Conread position: | 664-863 |
| Cow position: | chr10:34666171-34665965 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 665-863 |
| Cow position: | chr10:29732316-29732514 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 144 |
| Conread position: | 670-863 |
| Cow position: | chr10:47908516-47908702 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 44, 130 |
| Conread position: | 675-863 |
| Cow position: | chr10:32828458-32828647 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 153 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 39, 26 |
| Conread position: | 689-856 |
| Cow position: | chr10:20374966-20374798 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 705-863 |
| Cow position: | chr10:6556148-6556308 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 727-863 |
| Cow position: | chr10:51781803-51781666 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 728-863 |
| Cow position: | chr10:39209391-39209527 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 730-863 |
| Cow position: | chr10:48375974-48375840 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 129, 0 |
Show alignments to all cow chromosomes.