Cow genome map


           Conread name:
           Tra1-TCH01C100049
        

               Conread position:
               2-261
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               45, 61
               

               Conread position:
               2-394
               

               Cow position:
               
               

               Alignm length:
               424
               

               Alignm identity:
               302
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               48, 102
               

               Conread position:
               2-398
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 100
               

               Conread position:
               4-182
               

               Cow position:
               
               

               Alignm length:
               182
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               4-394
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 114
               

               Conread position:
               4-394
               

               Cow position:
               
               

               Alignm length:
               422
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               4-394
               

               Cow position:
               
               

               Alignm length:
               408
               

               Alignm identity:
               279
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               46, 73
               

               Conread position:
               4-394
               

               Cow position:
               
               

               Alignm length:
               423
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 74
               

               Conread position:
               4-394
               

               Cow position:
               
               

               Alignm length:
               419
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 192
               

               Conread position:
               4-394
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 107
               

               Conread position:
               4-394
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 93
               

               Conread position:
               4-397
               

               Cow position:
               
               

               Alignm length:
               404
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 108
               

               Conread position:
               4-398
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 23
               

               Conread position:
               16-389
               

               Cow position:
               
               

               Alignm length:
               404
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 101
               

               Conread position:
               19-394
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 13
               

               Conread position:
               20-394
               

               Cow position:
               
               

               Alignm length:
               404
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 114
               

               Conread position:
               20-394
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               20-394
               

               Cow position:
               
               

               Alignm length:
               396
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 50
               

               Conread position:
               20-398
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 308
               

               Conread position:
               35-394
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               40-394
               

               Cow position:
               
               

               Alignm length:
               383
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 12
               

               Conread position:
               53-394
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 226
               

               Conread position:
               53-398
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 230
               

               Conread position:
               54-398
               

               Cow position:
               
               

               Alignm length:
               373
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 19
               

               Conread position:
               67-398
               

               Cow position:
               
               

               Alignm length:
               343
               

               Alignm identity:
               231
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               40, 161
               

               Conread position:
               137-398
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               196
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               36, 150
               

               Conread position:
               631-863
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               631-863
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 26
               

               Conread position:
               632-859
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               23, 69
               

               Conread position:
               633-859
               

               Cow position:
               
               

               Alignm length:
               229
               

               Alignm identity:
               161
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               633-863
               

               Cow position:
               
               

               Alignm length:
               234
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               633-863
               

               Cow position:
               
               

               Alignm length:
               234
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               25, 127
               

               Conread position:
               633-863
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               637-859
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               638-859
               

               Cow position:
               
               

               Alignm length:
               224
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               639-863
               

               Cow position:
               
               

               Alignm length:
               229
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               639-863
               

               Cow position:
               
               

               Alignm length:
               228
               

               Alignm identity:
               176
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               16, 121
               

               Conread position:
               640-849
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               125, 65
               

               Conread position:
               640-850
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               74, 87
               

               Conread position:
               640-862
               

               Cow position:
               
               

               Alignm length:
               242
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               53, 17
               

               Conread position:
               641-856
               

               Cow position:
               
               

               Alignm length:
               219
               

               Alignm identity:
               172
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               641-859
               

               Cow position:
               
               

               Alignm length:
               221
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               14, 56
               

               Conread position:
               641-859
               

               Cow position:
               
               

               Alignm length:
               221
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               641-863
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               641-863
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               648-858
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               167
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               66, 111
               

               Conread position:
               648-859
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               654-863
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               167
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               205, 0
               

               Conread position:
               657-863
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               61, 40
               

               Conread position:
               671-858
               

               Cow position:
               
               

               Alignm length:
               195
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               43, 131
               

               Conread position:
               675-863
               

               Cow position:
               
               

               Alignm length:
               190
               

               Alignm identity:
               104
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               184, 0
               

               Conread position:
               709-863
               

               Cow position:
               
               

               Alignm length:
               157
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               729-859
               

               Cow position:
               
               

               Alignm length:
               131
               

               Alignm identity:
               108
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               752-863
               

               Cow position:
               
               

               Alignm length:
               113
               

               Alignm identity:
               92
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               107, 0
               
Show alignments to all cow chromosomes.