Cow genome map
| Conread name: | Tra1-TCH01C100049 |
| Conread position: | 2-261 |
| Cow position: | chr11:42522681-42522405 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 61 |
| Conread position: | 2-394 |
| Cow position: | chr11:49558896-49558485 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 302 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 48, 102 |
| Conread position: | 2-398 |
| Cow position: | chr11:3856003-3856415 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 100 |
| Conread position: | 4-182 |
| Cow position: | chr11:44490830-44490649 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 4-394 |
| Cow position: | chr11:9733894-9733478 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 114 |
| Conread position: | 4-394 |
| Cow position: | chr11:10848234-10848655 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 4-394 |
| Cow position: | chr11:15943561-15943167 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 46, 73 |
| Conread position: | 4-394 |
| Cow position: | chr11:26124143-26123724 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 74 |
| Conread position: | 4-394 |
| Cow position: | chr11:41169910-41169493 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 4-394 |
| Cow position: | chr11:44582551-44582139 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 107 |
| Conread position: | 4-394 |
| Cow position: | chr11:87142365-87142784 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 93 |
| Conread position: | 4-397 |
| Cow position: | chr11:1489359-1488964 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 108 |
| Conread position: | 4-398 |
| Cow position: | chr11:26070253-26069832 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 23 |
| Conread position: | 16-389 |
| Cow position: | chr11:49553379-49552980 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 101 |
| Conread position: | 19-394 |
| Cow position: | chr11:63654523-63654131 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 13 |
| Conread position: | 20-394 |
| Cow position: | chr11:4026810-4026409 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 114 |
| Conread position: | 20-394 |
| Cow position: | chr11:58135196-58135597 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 20-394 |
| Cow position: | chr11:85393018-85392631 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 50 |
| Conread position: | 20-398 |
| Cow position: | chr11:40775197-40774794 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 308 |
| Conread position: | 35-394 |
| Cow position: | chr11:23880852-23881230 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 40-394 |
| Cow position: | chr11:26548351-26548732 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 12 |
| Conread position: | 53-394 |
| Cow position: | chr11:1495190-1494831 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 226 |
| Conread position: | 53-398 |
| Cow position: | chr11:9156307-9155942 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 230 |
| Conread position: | 54-398 |
| Cow position: | chr11:26074125-26073754 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 19 |
| Conread position: | 67-398 |
| Cow position: | chr11:64355677-64356013 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 40, 161 |
| Conread position: | 137-398 |
| Cow position: | chr11:25865911-25865635 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 36, 150 |
| Conread position: | 631-863 |
| Cow position: | chr11:35894725-35894491 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 631-863 |
| Cow position: | chr11:67451674-67451907 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 26 |
| Conread position: | 632-859 |
| Cow position: | chr11:37802245-37802472 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 23, 69 |
| Conread position: | 633-859 |
| Cow position: | chr11:21475302-21475530 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 633-863 |
| Cow position: | chr11:23249288-23249055 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 633-863 |
| Cow position: | chr11:23881209-23881436 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 25, 127 |
| Conread position: | 633-863 |
| Cow position: | chr11:27657609-27657852 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 637-859 |
| Cow position: | chr11:53430851-53430625 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 638-859 |
| Cow position: | chr11:49039194-49038971 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 639-863 |
| Cow position: | chr11:7117598-7117826 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 639-863 |
| Cow position: | chr11:9733493-9733268 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 176 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 16, 121 |
| Conread position: | 640-849 |
| Cow position: | chr11:63647251-63647458 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 125, 65 |
| Conread position: | 640-850 |
| Cow position: | chr11:30122655-30122452 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 74, 87 |
| Conread position: | 640-862 |
| Cow position: | chr11:20506425-20506665 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 53, 17 |
| Conread position: | 641-856 |
| Cow position: | chr11:17119154-17118936 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 641-859 |
| Cow position: | chr11:15986441-15986652 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 14, 56 |
| Conread position: | 641-859 |
| Cow position: | chr11:28228578-28228358 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr11:19062887-19062662 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 641-863 |
| Cow position: | chr11:32453021-32453246 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 648-858 |
| Cow position: | chr11:26073766-26073561 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 167 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 66, 111 |
| Conread position: | 648-859 |
| Cow position: | chr11:26069844-26069632 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 654-863 |
| Cow position: | chr11:73134507-73134717 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 657-863 |
| Cow position: | chr11:72309831-72309625 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 61, 40 |
| Conread position: | 671-858 |
| Cow position: | chr11:47759061-47758870 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 43, 131 |
| Conread position: | 675-863 |
| Cow position: | chr11:10957041-10957230 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 184, 0 |
| Conread position: | 709-863 |
| Cow position: | chr11:40405794-40405638 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 729-859 |
| Cow position: | chr11:21470093-21470223 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 752-863 |
| Cow position: | chr11:42371115-42371227 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 107, 0 |
Show alignments to all cow chromosomes.