Cow genome map
| Conread name: | Tra1-TCH01C100049 |
| Conread position: | 2-314 |
| Cow position: | chr15:9430666-9430992 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 47, 76 |
| Conread position: | 2-379 |
| Cow position: | chr15:1851711-1851332 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 259 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 49, 79 |
| Conread position: | 2-398 |
| Cow position: | chr15:6079480-6079893 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 152 |
| Conread position: | 3-297 |
| Cow position: | chr15:13677261-13677556 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 82, 47 |
| Conread position: | 4-391 |
| Cow position: | chr15:7837991-7838409 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 13 |
| Conread position: | 4-394 |
| Cow position: | chr15:58384-58799 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 101 |
| Conread position: | 4-394 |
| Cow position: | chr15:2077387-2077796 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 74 |
| Conread position: | 4-394 |
| Cow position: | chr15:6383444-6383010 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 4-394 |
| Cow position: | chr15:21665014-21664596 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 74 |
| Conread position: | 4-398 |
| Cow position: | chr15:51675445-51675865 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 315 |
| Conread position: | 6-394 |
| Cow position: | chr15:20355871-20355447 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 283 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 43, 89 |
| Conread position: | 6-398 |
| Cow position: | chr15:4962368-4962780 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 233 |
| Conread position: | 14-390 |
| Cow position: | chr15:8100207-8100600 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 265 |
| Conread position: | 20-394 |
| Cow position: | chr15:2926053-2926450 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 268 |
| Conread position: | 20-394 |
| Cow position: | chr15:18332084-18331690 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 307 |
| Conread position: | 20-394 |
| Cow position: | chr15:18577457-18577856 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 364 |
| Conread position: | 20-398 |
| Cow position: | chr15:31359625-31360014 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 35-394 |
| Cow position: | chr15:6155176-6154783 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 35 |
| Conread position: | 47-398 |
| Cow position: | chr15:14581583-14581213 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 43 |
| Conread position: | 51-394 |
| Cow position: | chr15:3009059-3008699 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 260 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 71, 58 |
| Conread position: | 77-394 |
| Cow position: | chr15:44071398-44071742 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 85-394 |
| Cow position: | chr15:3777859-3777542 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 61, 145 |
| Conread position: | 160-397 |
| Cow position: | chr15:20361196-20360944 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 9, 210 |
| Conread position: | 619-859 |
| Cow position: | chr15:53299572-53299812 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 168 |
| Conread position: | 628-863 |
| Cow position: | chr15:32067491-32067254 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 59 |
| Conread position: | 629-863 |
| Cow position: | chr15:9003107-9002867 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 630-843 |
| Cow position: | chr15:7892226-7892013 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 27 |
| Conread position: | 630-863 |
| Cow position: | chr15:4672555-4672788 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 16 |
| Conread position: | 630-863 |
| Cow position: | chr15:17294176-17294404 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 84, 16 |
| Conread position: | 630-863 |
| Cow position: | chr15:53339342-53339578 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 71 |
| Conread position: | 631-854 |
| Cow position: | chr15:51716534-51716765 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 632-859 |
| Cow position: | chr15:9912109-9911882 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 7 |
| Conread position: | 634-854 |
| Cow position: | chr15:51675841-51676066 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 80, 22 |
| Conread position: | 635-860 |
| Cow position: | chr15:1830459-1830250 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 79, 21 |
| Conread position: | 639-851 |
| Cow position: | chr15:4679408-4679619 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 129 |
| Conread position: | 640-859 |
| Cow position: | chr15:6590985-6590766 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 17 |
| Conread position: | 641-859 |
| Cow position: | chr15:2013689-2013911 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr15:58786-59007 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 14, 44 |
| Conread position: | 641-863 |
| Cow position: | chr15:1765448-1765671 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 14, 94 |
| Conread position: | 641-863 |
| Cow position: | chr15:1833508-1833284 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 130 |
| Conread position: | 641-863 |
| Cow position: | chr15:6561717-6561942 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 641-863 |
| Cow position: | chr15:25205874-25205651 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 16 |
| Conread position: | 641-863 |
| Cow position: | chr15:35646548-35646329 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 642-859 |
| Cow position: | chr15:4766322-4766543 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 13, 70 |
| Conread position: | 642-863 |
| Cow position: | chr15:28489021-28488798 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 13, 43 |
| Conread position: | 646-863 |
| Cow position: | chr15:2926443-2926646 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 68, 107 |
| Conread position: | 648-849 |
| Cow position: | chr15:14581225-14581023 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 648-859 |
| Cow position: | chr15:1767973-1768178 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 66, 120 |
| Conread position: | 654-863 |
| Cow position: | chr15:32712381-32712592 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 659-863 |
| Cow position: | chr15:33122527-33122733 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 163 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 676-863 |
| Cow position: | chr15:6382995-6382806 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 154 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 704-859 |
| Cow position: | chr15:4962809-4962964 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 704-863 |
| Cow position: | chr15:1783526-1783686 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 713-859 |
| Cow position: | chr15:31859752-31859606 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 715-863 |
| Cow position: | chr15:32695371-32695514 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 143, 48 |
Show alignments to all cow chromosomes.