Cow genome map
| Conread name: | Tra1-TCH01C100049 |
| Conread position: | 2-255 |
| Cow position: | chr16:42736008-42735745 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 48, 109 |
| Conread position: | 2-393 |
| Cow position: | chr16:16270758-16270335 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 343 |
| Conread position: | 2-393 |
| Cow position: | chr16:23808718-23809116 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 76 |
| Conread position: | 2-397 |
| Cow position: | chr16:3330321-3330739 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 2-398 |
| Cow position: | chr16:16897840-16898261 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 106 |
| Conread position: | 2-398 |
| Cow position: | chr16:23671081-23671507 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 300 |
| Conread position: | 4-394 |
| Cow position: | chr16:1567067-1566653 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 74 |
| Conread position: | 4-394 |
| Cow position: | chr16:2726844-2726412 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 326 |
| Conread position: | 4-394 |
| Cow position: | chr16:14665422-14665013 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 328 |
| Conread position: | 4-394 |
| Cow position: | chr16:43896889-43896461 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 4-398 |
| Cow position: | chr16:23535505-23535093 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 275 |
| Conread position: | 6-388 |
| Cow position: | chr16:17056583-17056183 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 238 |
| Conread position: | 13-394 |
| Cow position: | chr16:5662225-5662640 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 109 |
| Conread position: | 14-394 |
| Cow position: | chr16:3088806-3088403 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 20-394 |
| Cow position: | chr16:31591514-31591118 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 35-394 |
| Cow position: | chr16:15185496-15185880 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 35-394 |
| Cow position: | chr16:25457049-25456680 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 12 |
| Conread position: | 35-394 |
| Cow position: | chr16:54324911-54324534 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 337 |
| Conread position: | 36-394 |
| Cow position: | chr16:2482711-2482334 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 34 |
| Conread position: | 47-385 |
| Cow position: | chr16:26105624-26105256 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 47-394 |
| Cow position: | chr16:25342394-25342772 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 276 |
| Conread position: | 84-395 |
| Cow position: | chr16:51403419-51403073 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 94-388 |
| Cow position: | chr16:33011-33324 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 28, 16 |
| Conread position: | 121-394 |
| Cow position: | chr16:19080476-19080771 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 159-398 |
| Cow position: | chr16:16228872-16229125 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 200 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 38, 111 |
| Conread position: | 163-397 |
| Cow position: | chr16:10967521-10967294 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 106, 30 |
| Conread position: | 179-388 |
| Cow position: | chr16:18677928-18678146 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 82, 49 |
| Conread position: | 179-398 |
| Cow position: | chr16:41685668-41685447 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 58, 14 |
| Conread position: | 191-394 |
| Cow position: | chr16:2410347-2410128 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 193-394 |
| Cow position: | chr16:1860823-1861036 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 171 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 630-863 |
| Cow position: | chr16:51084936-51085170 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 84, 29 |
| Conread position: | 640-863 |
| Cow position: | chr16:34531086-34531300 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 219, 57 |
| Conread position: | 641-849 |
| Cow position: | chr16:9931521-9931729 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 18, 160 |
| Conread position: | 641-859 |
| Cow position: | chr16:5527597-5527378 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 160 |
| Conread position: | 641-859 |
| Cow position: | chr16:5662627-5662847 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-859 |
| Cow position: | chr16:16270347-16270128 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 160 |
| Conread position: | 641-863 |
| Cow position: | chr16:3088416-3088191 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr16:20202760-20202988 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 14, 85 |
| Conread position: | 641-863 |
| Cow position: | chr16:25342759-25342984 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 641-863 |
| Cow position: | chr16:49221125-49220905 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 48 |
| Conread position: | 646-863 |
| Cow position: | chr16:25086406-25086624 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 154 |
| Conread position: | 647-863 |
| Cow position: | chr16:3330727-3330942 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 168 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 67, 54 |
| Conread position: | 648-859 |
| Cow position: | chr16:28158364-28158575 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 45 |
| Conread position: | 648-863 |
| Cow position: | chr16:16240493-16240281 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 211, 78 |
| Conread position: | 650-859 |
| Cow position: | chr16:49233685-49233483 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 68, 43 |
| Conread position: | 654-863 |
| Cow position: | chr16:33330-33539 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 66, 39 |
| Conread position: | 659-842 |
| Cow position: | chr16:4301393-4301203 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 55, 32 |
| Conread position: | 670-862 |
| Cow position: | chr16:23809173-23809364 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 0 |
Show alignments to all cow chromosomes.