Cow genome map

Conread name: Tra1-TCH01C100049

Conread position: 2-390
Cow position: chr17:19020528-19020937 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 291
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 42, 283

Conread position: 2-393
Cow position: chr17:54493-54097 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 294
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 37, 225

Conread position: 2-398
Cow position: chr17:15372183-15372594 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 115

Conread position: 2-398
Cow position: chr17:20086798-20086391 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 31

Conread position: 4-390
Cow position: chr17:4061054-4061475 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 340

Conread position: 4-391
Cow position: chr17:239303-239675 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 49

Conread position: 4-391
Cow position: chr17:19267871-19267463 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 285

Conread position: 4-394
Cow position: chr17:6069511-6069918 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 4-394
Cow position: chr17:11086763-11086352 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 64

Conread position: 4-399
Cow position: chr17:2174767-2175177 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 280
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 47, 30

Conread position: 5-391
Cow position: chr17:20403389-20403792 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 123

Conread position: 5-397
Cow position: chr17:16121585-16121202 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 48

Conread position: 20-389
Cow position: chr17:4168160-4168542 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 245
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 30, 296

Conread position: 35-394
Cow position: chr17:24029007-24028629 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 306

Conread position: 35-394
Cow position: chr17:40805806-40806182 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 35

Conread position: 51-394
Cow position: chr17:27793767-27793406 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 59

Conread position: 77-397
Cow position: chr17:23038618-23038945 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 245
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 116, 22

Conread position: 161-391
Cow position: chr17:3640775-3640533 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 199-394
Cow position: chr17:733174-732967 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 166
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 38, 0

Conread position: 627-860
Cow position: chr17:22133615-22133849 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 178
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 85, 19

Conread position: 630-846
Cow position: chr17:1704225-1704440 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 165
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 84, 16

Conread position: 631-863
Cow position: chr17:135982-136215 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 171
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 27, 67

Conread position: 638-863
Cow position: chr17:2077635-2077405 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 168
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 17, 0

Conread position: 639-863
Cow position: chr17:34157482-34157709 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 641-863
Cow position: chr17:182935-183158 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 168
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 14, 134

Conread position: 641-863
Cow position: chr17:2263501-2263726 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 641-863
Cow position: chr17:4061466-4061688 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 152

Conread position: 641-863
Cow position: chr17:5227985-5228209 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 19, 118

Conread position: 641-863
Cow position: chr17:23323086-23322861 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 641-863
Cow position: chr17:27793419-27793197 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 19

Conread position: 648-859
Cow position: chr17:15372582-15372794 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 659-863
Cow position: chr17:39049596-39049802 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 705-863
Cow position: chr17:4346152-4345992 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 134
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 9, 0

Conread position: 705-863
Cow position: chr17:19980709-19980549 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 129
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 9, 0

Conread position: 743-863
Cow position: chr17:33284222-33284105 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 116, 16

Show alignments to all cow chromosomes.