Cow genome map

Conread name: Tra1-TCH01C100049

Conread position: 1-394
Cow position: chr2:47811457-47811877 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 2-202
Cow position: chr2:49628216-49628428 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 48, 205

Conread position: 2-205
Cow position: chr2:14823695-14823910 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 163
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 45, 52

Conread position: 2-314
Cow position: chr2:74494219-74493905 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 215
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 80, 39

Conread position: 2-391
Cow position: chr2:15576228-15575823 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 124

Conread position: 2-397
Cow position: chr2:55483535-55483119 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 85

Conread position: 3-394
Cow position: chr2:13482057-13481671 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 284
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 47, 147

Conread position: 4-394
Cow position: chr2:387168-386754 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 284
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 44, 283

Conread position: 4-394
Cow position: chr2:13045101-13044677 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 384

Conread position: 4-394
Cow position: chr2:44990687-44990270 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 83

Conread position: 4-398
Cow position: chr2:44934362-44933951 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 192

Conread position: 6-398
Cow position: chr2:78743205-78743599 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 110

Conread position: 11-394
Cow position: chr2:9189407-9188996 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 299
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 121, 29

Conread position: 16-394
Cow position: chr2:19011977-19012395 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 68

Conread position: 20-394
Cow position: chr2:6962146-6962544 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 229

Conread position: 20-394
Cow position: chr2:10185600-10185197 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 20-394
Cow position: chr2:11158494-11158090 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 33-398
Cow position: chr2:16074884-16074502 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 281

Conread position: 35-392
Cow position: chr2:36052360-36052007 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 77

Conread position: 35-397
Cow position: chr2:50078239-50078602 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 12

Conread position: 40-394
Cow position: chr2:65937575-65937195 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 19

Conread position: 51-389
Cow position: chr2:2087499-2087143 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 0

Conread position: 74-394
Cow position: chr2:25743233-25743570 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 29

Conread position: 75-394
Cow position: chr2:36975786-36976115 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 221
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 46, 52

Conread position: 94-398
Cow position: chr2:32458333-32458028 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 229
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 60, 26

Conread position: 99-391
Cow position: chr2:10264689-10264382 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 121-401
Cow position: chr2:54693698-54693987 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 211
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 49, 80

Conread position: 134-398
Cow position: chr2:5869587-5869323 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 199
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 42, 20

Conread position: 137-394
Cow position: chr2:32065285-32065008 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 138-398
Cow position: chr2:905030-905300 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 195
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 23, 99

Conread position: 143-394
Cow position: chr2:33795101-33794841 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 16

Conread position: 619-863
Cow position: chr2:42361272-42361026 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 189
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 36, 86

Conread position: 624-863
Cow position: chr2:34052159-34052405 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 186
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 31, 183

Conread position: 630-863
Cow position: chr2:13553577-13553810 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 39

Conread position: 631-863
Cow position: chr2:9958066-9957830 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 631-863
Cow position: chr2:80291753-80291520 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 172
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 83, 15

Conread position: 637-863
Cow position: chr2:6880387-6880601 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 175
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 77, 29

Conread position: 638-863
Cow position: chr2:24925583-24925808 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 168
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 20, 60

Conread position: 640-863
Cow position: chr2:47602247-47602021 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 158
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 74, 0

Conread position: 641-848
Cow position: chr2:12328148-12328362 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 167
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 13, 35

Conread position: 641-848
Cow position: chr2:24471613-24471403 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 165
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 14, 131

Conread position: 641-863
Cow position: chr2:10610627-10610402 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 641-863
Cow position: chr2:11558867-11559092 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 641-863
Cow position: chr2:12362967-12362739 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 14, 50

Conread position: 641-863
Cow position: chr2:41687786-41688010 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 174
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 14, 160

Conread position: 641-863
Cow position: chr2:43445985-43446203 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 178
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 12, 57

Conread position: 647-859
Cow position: chr2:78743586-78743796 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 78

Conread position: 648-859
Cow position: chr2:905288-905500 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 66, 90

Conread position: 654-859
Cow position: chr2:45938669-45938464 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 190

Conread position: 660-859
Cow position: chr2:72688645-72688845 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 160
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 670-863
Cow position: chr2:41047982-41047786 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 157
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 8, 0

Conread position: 671-842
Cow position: chr2:2411735-2411566 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 138
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 43, 22

Conread position: 679-863
Cow position: chr2:33082909-33082723 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 153
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 35, 0

Conread position: 699-858
Cow position: chr2:44092448-44092608 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 126
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 15, 0

Conread position: 724-863
Cow position: chr2:49303192-49303053 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 135, 59

Conread position: 726-862
Cow position: chr2:25022005-25022141 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 751-859
Cow position: chr2:44989716-44989608 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.