Cow genome map
Conread name: | Tra1-TCH01C100049 |
Conread position: | 1-394 |
Cow position: | chr2:47811457-47811877 (view UCSC Genome Browser custom track) |
Alignm length: | 421 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 0 |
Conread position: | 2-202 |
Cow position: | chr2:49628216-49628428 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 150 |
Alignm E-value: | 8e-22 |
Alignm gaps (pig, cow): | 48, 205 |
Conread position: | 2-205 |
Cow position: | chr2:14823695-14823910 (view UCSC Genome Browser custom track) |
Alignm length: | 218 |
Alignm identity: | 163 |
Alignm E-value: | 6e-30 |
Alignm gaps (pig, cow): | 45, 52 |
Conread position: | 2-314 |
Cow position: | chr2:74494219-74493905 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 215 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 80, 39 |
Conread position: | 2-391 |
Cow position: | chr2:15576228-15575823 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 124 |
Conread position: | 2-397 |
Cow position: | chr2:55483535-55483119 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 310 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 85 |
Conread position: | 3-394 |
Cow position: | chr2:13482057-13481671 (view UCSC Genome Browser custom track) |
Alignm length: | 410 |
Alignm identity: | 284 |
Alignm E-value: | 5e-38 |
Alignm gaps (pig, cow): | 47, 147 |
Conread position: | 4-394 |
Cow position: | chr2:387168-386754 (view UCSC Genome Browser custom track) |
Alignm length: | 417 |
Alignm identity: | 284 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 44, 283 |
Conread position: | 4-394 |
Cow position: | chr2:13045101-13044677 (view UCSC Genome Browser custom track) |
Alignm length: | 426 |
Alignm identity: | 314 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 384 |
Conread position: | 4-394 |
Cow position: | chr2:44990687-44990270 (view UCSC Genome Browser custom track) |
Alignm length: | 419 |
Alignm identity: | 307 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 83 |
Conread position: | 4-398 |
Cow position: | chr2:44934362-44933951 (view UCSC Genome Browser custom track) |
Alignm length: | 414 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 192 |
Conread position: | 6-398 |
Cow position: | chr2:78743205-78743599 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 110 |
Conread position: | 11-394 |
Cow position: | chr2:9189407-9188996 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 299 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 121, 29 |
Conread position: | 16-394 |
Cow position: | chr2:19011977-19012395 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 308 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 68 |
Conread position: | 20-394 |
Cow position: | chr2:6962146-6962544 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 229 |
Conread position: | 20-394 |
Cow position: | chr2:10185600-10185197 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 298 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 20-394 |
Cow position: | chr2:11158494-11158090 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 303 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 0 |
Conread position: | 33-398 |
Cow position: | chr2:16074884-16074502 (view UCSC Genome Browser custom track) |
Alignm length: | 386 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 281 |
Conread position: | 35-392 |
Cow position: | chr2:36052360-36052007 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 77 |
Conread position: | 35-397 |
Cow position: | chr2:50078239-50078602 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 199, 12 |
Conread position: | 40-394 |
Cow position: | chr2:65937575-65937195 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 19 |
Conread position: | 51-389 |
Cow position: | chr2:2087499-2087143 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 101, 0 |
Conread position: | 74-394 |
Cow position: | chr2:25743233-25743570 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 29 |
Conread position: | 75-394 |
Cow position: | chr2:36975786-36976115 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 221 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 46, 52 |
Conread position: | 94-398 |
Cow position: | chr2:32458333-32458028 (view UCSC Genome Browser custom track) |
Alignm length: | 319 |
Alignm identity: | 229 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 60, 26 |
Conread position: | 99-391 |
Cow position: | chr2:10264689-10264382 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 233 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 0 |
Conread position: | 121-401 |
Cow position: | chr2:54693698-54693987 (view UCSC Genome Browser custom track) |
Alignm length: | 292 |
Alignm identity: | 211 |
Alignm E-value: | 8.00141e-43 |
Alignm gaps (pig, cow): | 49, 80 |
Conread position: | 134-398 |
Cow position: | chr2:5869587-5869323 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 199 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 42, 20 |
Conread position: | 137-394 |
Cow position: | chr2:32065285-32065008 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 215 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 0 |
Conread position: | 138-398 |
Cow position: | chr2:905030-905300 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 195 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 23, 99 |
Conread position: | 143-394 |
Cow position: | chr2:33795101-33794841 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 205 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 16 |
Conread position: | 619-863 |
Cow position: | chr2:42361272-42361026 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 189 |
Alignm E-value: | 2.94273e-44 |
Alignm gaps (pig, cow): | 36, 86 |
Conread position: | 624-863 |
Cow position: | chr2:34052159-34052405 (view UCSC Genome Browser custom track) |
Alignm length: | 249 |
Alignm identity: | 186 |
Alignm E-value: | 5.99994e-41 |
Alignm gaps (pig, cow): | 31, 183 |
Conread position: | 630-863 |
Cow position: | chr2:13553577-13553810 (view UCSC Genome Browser custom track) |
Alignm length: | 236 |
Alignm identity: | 185 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 39 |
Conread position: | 631-863 |
Cow position: | chr2:9958066-9957830 (view UCSC Genome Browser custom track) |
Alignm length: | 237 |
Alignm identity: | 183 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 0 |
Conread position: | 631-863 |
Cow position: | chr2:80291753-80291520 (view UCSC Genome Browser custom track) |
Alignm length: | 235 |
Alignm identity: | 172 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 83, 15 |
Conread position: | 637-863 |
Cow position: | chr2:6880387-6880601 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 175 |
Alignm E-value: | 5e-38 |
Alignm gaps (pig, cow): | 77, 29 |
Conread position: | 638-863 |
Cow position: | chr2:24925583-24925808 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 168 |
Alignm E-value: | 4e-36 |
Alignm gaps (pig, cow): | 20, 60 |
Conread position: | 640-863 |
Cow position: | chr2:47602247-47602021 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 158 |
Alignm E-value: | 6e-30 |
Alignm gaps (pig, cow): | 74, 0 |
Conread position: | 641-848 |
Cow position: | chr2:12328148-12328362 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 167 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 13, 35 |
Conread position: | 641-848 |
Cow position: | chr2:24471613-24471403 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 165 |
Alignm E-value: | 5e-39 |
Alignm gaps (pig, cow): | 14, 131 |
Conread position: | 641-863 |
Cow position: | chr2:10610627-10610402 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 178 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 0 |
Conread position: | 641-863 |
Cow position: | chr2:11558867-11559092 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 179 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 0 |
Conread position: | 641-863 |
Cow position: | chr2:12362967-12362739 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 178 |
Alignm E-value: | 8.96831e-44 |
Alignm gaps (pig, cow): | 14, 50 |
Conread position: | 641-863 |
Cow position: | chr2:41687786-41688010 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 174 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 14, 160 |
Conread position: | 641-863 |
Cow position: | chr2:43445985-43446203 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 178 |
Alignm E-value: | 8.96831e-44 |
Alignm gaps (pig, cow): | 12, 57 |
Conread position: | 647-859 |
Cow position: | chr2:78743586-78743796 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 172 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 78 |
Conread position: | 648-859 |
Cow position: | chr2:905288-905500 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 157 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 66, 90 |
Conread position: | 654-859 |
Cow position: | chr2:45938669-45938464 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 169 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 190 |
Conread position: | 660-859 |
Cow position: | chr2:72688645-72688845 (view UCSC Genome Browser custom track) |
Alignm length: | 201 |
Alignm identity: | 160 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 0 |
Conread position: | 670-863 |
Cow position: | chr2:41047982-41047786 (view UCSC Genome Browser custom track) |
Alignm length: | 197 |
Alignm identity: | 157 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 8, 0 |
Conread position: | 671-842 |
Cow position: | chr2:2411735-2411566 (view UCSC Genome Browser custom track) |
Alignm length: | 173 |
Alignm identity: | 138 |
Alignm E-value: | 4e-36 |
Alignm gaps (pig, cow): | 43, 22 |
Conread position: | 679-863 |
Cow position: | chr2:33082909-33082723 (view UCSC Genome Browser custom track) |
Alignm length: | 187 |
Alignm identity: | 153 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 35, 0 |
Conread position: | 699-858 |
Cow position: | chr2:44092448-44092608 (view UCSC Genome Browser custom track) |
Alignm length: | 161 |
Alignm identity: | 126 |
Alignm E-value: | 8e-33 |
Alignm gaps (pig, cow): | 15, 0 |
Conread position: | 724-863 |
Cow position: | chr2:49303192-49303053 (view UCSC Genome Browser custom track) |
Alignm length: | 141 |
Alignm identity: | 112 |
Alignm E-value: | 5e-28 |
Alignm gaps (pig, cow): | 135, 59 |
Conread position: | 726-862 |
Cow position: | chr2:25022005-25022141 (view UCSC Genome Browser custom track) |
Alignm length: | 137 |
Alignm identity: | 109 |
Alignm E-value: | 5e-29 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 751-859 |
Cow position: | chr2:44989716-44989608 (view UCSC Genome Browser custom track) |
Alignm length: | 109 |
Alignm identity: | 91 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.