Cow genome map
| Conread name: | Tra1-TCH01C100049 |
| Conread position: | 2-394 |
| Cow position: | chr21:218268-218665 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 290 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 37, 124 |
| Conread position: | 3-309 |
| Cow position: | chr21:18817304-18816993 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 47, 112 |
| Conread position: | 4-390 |
| Cow position: | chr21:10851329-10851734 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 114 |
| Conread position: | 4-394 |
| Cow position: | chr21:27069718-27069303 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 4-394 |
| Cow position: | chr21:40270429-40270011 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 117 |
| Conread position: | 4-394 |
| Cow position: | chr21:47646575-47646992 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 4-398 |
| Cow position: | chr21:2417459-2417877 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 69 |
| Conread position: | 5-390 |
| Cow position: | chr21:35145003-35145404 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 218 |
| Conread position: | 12-394 |
| Cow position: | chr21:1286950-1286554 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 163 |
| Conread position: | 12-398 |
| Cow position: | chr21:4185177-4185583 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 124 |
| Conread position: | 13-394 |
| Cow position: | chr21:5012453-5012049 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 291 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 32, 113 |
| Conread position: | 20-391 |
| Cow position: | chr21:31515057-31514658 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 20-395 |
| Cow position: | chr21:30598221-30597808 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 75-394 |
| Cow position: | chr21:5018463-5018801 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 298 |
| Conread position: | 163-394 |
| Cow position: | chr21:2880407-2880164 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 180-394 |
| Cow position: | chr21:28256882-28257087 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 56, 19 |
| Conread position: | 191-398 |
| Cow position: | chr21:34655287-34655497 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 165 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 5, 52 |
| Conread position: | 194-391 |
| Cow position: | chr21:30563125-30563328 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 159 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 248-398 |
| Cow position: | chr21:997327-997179 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 93, 19 |
| Conread position: | 633-859 |
| Cow position: | chr21:468539-468765 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 19, 115 |
| Conread position: | 634-859 |
| Cow position: | chr21:9893614-9893836 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 72 |
| Conread position: | 640-863 |
| Cow position: | chr21:2539432-2539206 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 206 |
| Conread position: | 641-863 |
| Cow position: | chr21:2512498-2512722 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 641-863 |
| Cow position: | chr21:11507262-11507487 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 641-863 |
| Cow position: | chr21:19612408-19612633 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr21:33710797-33711022 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 641-863 |
| Cow position: | chr21:38802085-38802310 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 644-863 |
| Cow position: | chr21:361312-361545 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 58, 154 |
| Conread position: | 647-859 |
| Cow position: | chr21:4588350-4588147 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 67, 43 |
| Conread position: | 647-863 |
| Cow position: | chr21:2417864-2418077 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 212, 66 |
| Conread position: | 647-863 |
| Cow position: | chr21:34655484-34655699 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 23 |
| Conread position: | 649-859 |
| Cow position: | chr21:2712568-2712764 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 713-859 |
| Cow position: | chr21:42915529-42915675 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.