Cow genome map


           Conread name:
           Tra1-TCH01C100049
        

               Conread position:
               2-171
               

               Cow position:
               
               

               Alignm length:
               180
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               38, 123
               

               Conread position:
               2-391
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 76
               

               Conread position:
               2-398
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 84
               

               Conread position:
               2-398
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 124
               

               Conread position:
               4-391
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               4-394
               

               Cow position:
               
               

               Alignm length:
               412
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               4-394
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 322
               

               Conread position:
               4-394
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 120
               

               Conread position:
               5-394
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               6-392
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 118
               

               Conread position:
               6-394
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               13-389
               

               Cow position:
               
               

               Alignm length:
               399
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               14-394
               

               Cow position:
               
               

               Alignm length:
               408
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 100
               

               Conread position:
               20-394
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 98
               

               Conread position:
               34-398
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 13
               

               Conread position:
               35-394
               

               Cow position:
               
               

               Alignm length:
               373
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 338
               

               Conread position:
               47-394
               

               Cow position:
               
               

               Alignm length:
               363
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 203
               

               Conread position:
               74-398
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 85
               

               Conread position:
               154-396
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 166
               

               Conread position:
               161-396
               

               Cow position:
               
               

               Alignm length:
               248
               

               Alignm identity:
               193
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               32, 159
               

               Conread position:
               193-394
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 139
               

               Conread position:
               206-394
               

               Cow position:
               
               

               Alignm length:
               194
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               163, 70
               

               Conread position:
               239-394
               

               Cow position:
               
               

               Alignm length:
               163
               

               Alignm identity:
               125
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               248-398
               

               Cow position:
               
               

               Alignm length:
               156
               

               Alignm identity:
               123
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               8, 72
               

               Conread position:
               586-849
               

               Cow position:
               
               

               Alignm length:
               266
               

               Alignm identity:
               191
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               67, 90
               

               Conread position:
               619-859
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 160
               

               Conread position:
               628-863
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               630-863
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               175
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               84, 27
               

               Conread position:
               631-859
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 28
               

               Conread position:
               631-859
               

               Cow position:
               
               

               Alignm length:
               231
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 15
               

               Conread position:
               631-862
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               178
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               27, 81
               

               Conread position:
               631-863
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               633-859
               

               Cow position:
               
               

               Alignm length:
               233
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               633-863
               

               Cow position:
               
               

               Alignm length:
               234
               

               Alignm identity:
               176
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               27, 128
               

               Conread position:
               638-859
               

               Cow position:
               
               

               Alignm length:
               224
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               18, 56
               

               Conread position:
               640-863
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               641-863
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               171
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               641-863
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 101
               

               Conread position:
               641-863
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               646-859
               

               Cow position:
               
               

               Alignm length:
               216
               

               Alignm identity:
               171
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               646-863
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               57, 173
               

               Conread position:
               646-863
               

               Cow position:
               
               

               Alignm length:
               220
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 43
               

               Conread position:
               648-859
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               164
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               66, 49
               

               Conread position:
               654-859
               

               Cow position:
               
               

               Alignm length:
               207
               

               Alignm identity:
               166
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               654-863
               

               Cow position:
               
               

               Alignm length:
               216
               

               Alignm identity:
               166
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               659-863
               

               Cow position:
               
               

               Alignm length:
               208
               

               Alignm identity:
               169
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 111
               

               Conread position:
               663-863
               

               Cow position:
               
               

               Alignm length:
               203
               

               Alignm identity:
               171
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               680-859
               

               Cow position:
               
               

               Alignm length:
               181
               

               Alignm identity:
               143
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               46, 16
               

               Conread position:
               717-849
               

               Cow position:
               
               

               Alignm length:
               133
               

               Alignm identity:
               109
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               735-863
               

               Cow position:
               
               

               Alignm length:
               130
               

               Alignm identity:
               108
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               125, 34
               

               Conread position:
               743-859
               

               Cow position:
               
               

               Alignm length:
               119
               

               Alignm identity:
               94
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               25, 0
               
Show alignments to all cow chromosomes.