Cow genome map
| Conread name: | Tra1-TCH01C100049 |
| Conread position: | 1-394 |
| Cow position: | chr28:783773-784192 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 329 |
| Conread position: | 2-390 |
| Cow position: | chr28:8719828-8719426 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 49 |
| Conread position: | 2-394 |
| Cow position: | chr28:1386279-1385874 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 20 |
| Conread position: | 4-196 |
| Cow position: | chr28:10072392-10072599 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 4-339 |
| Cow position: | chr28:7811564-7811874 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 147 |
| Conread position: | 4-390 |
| Cow position: | chr28:17389520-17389932 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 4-394 |
| Cow position: | chr28:5567259-5567659 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 74 |
| Conread position: | 4-394 |
| Cow position: | chr28:5750588-5750168 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 338 |
| Conread position: | 4-394 |
| Cow position: | chr28:22260032-22259619 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 4-394 |
| Cow position: | chr28:29821115-29821526 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 193 |
| Conread position: | 4-394 |
| Cow position: | chr28:32791259-32790857 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 74 |
| Conread position: | 5-398 |
| Cow position: | chr28:10646301-10645893 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 88 |
| Conread position: | 13-394 |
| Cow position: | chr28:1954494-1954890 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 19 |
| Conread position: | 20-394 |
| Cow position: | chr28:2085594-2086000 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 20-394 |
| Cow position: | chr28:15034976-15034576 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 13 |
| Conread position: | 20-398 |
| Cow position: | chr28:1166744-1166352 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 58 |
| Conread position: | 35-394 |
| Cow position: | chr28:17666148-17665772 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 35-398 |
| Cow position: | chr28:26425096-26424720 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 230 |
| Conread position: | 44-398 |
| Cow position: | chr28:18146569-18146198 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 129, 26 |
| Conread position: | 47-391 |
| Cow position: | chr28:7741612-7741964 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 224 |
| Conread position: | 47-394 |
| Cow position: | chr28:7827157-7827520 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 23 |
| Conread position: | 51-394 |
| Cow position: | chr28:484421-484059 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 80-394 |
| Cow position: | chr28:1216633-1216300 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 87 |
| Conread position: | 161-394 |
| Cow position: | chr28:34595518-34595767 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 191 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 31, 6 |
| Conread position: | 179-392 |
| Cow position: | chr28:10470975-10471194 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 22, 96 |
| Conread position: | 182-394 |
| Cow position: | chr28:5112810-5112589 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 52, 22 |
| Conread position: | 182-394 |
| Cow position: | chr28:12151645-12151860 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 52, 30 |
| Conread position: | 214-398 |
| Cow position: | chr28:698628-698818 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 232-398 |
| Cow position: | chr28:10067965-10067796 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 81, 134 |
| Conread position: | 244-394 |
| Cow position: | chr28:1813552-1813398 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 630-863 |
| Cow position: | chr28:5766244-5766478 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 105 |
| Conread position: | 631-859 |
| Cow position: | chr28:25760983-25761206 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 83, 26 |
| Conread position: | 639-850 |
| Cow position: | chr28:5814746-5814942 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 11, 76 |
| Conread position: | 639-863 |
| Cow position: | chr28:3190732-3190505 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 639-863 |
| Cow position: | chr28:6778421-6778194 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 640-863 |
| Cow position: | chr28:5799814-5800039 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 123 |
| Conread position: | 640-863 |
| Cow position: | chr28:11504719-11504494 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 162 |
| Conread position: | 641-863 |
| Cow position: | chr28:484072-483847 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 641-863 |
| Cow position: | chr28:1459617-1459842 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 641-863 |
| Cow position: | chr28:1954877-1955102 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 641-863 |
| Cow position: | chr28:24590379-24590603 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 19, 160 |
| Conread position: | 645-863 |
| Cow position: | chr28:24669125-24669344 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 91 |
| Conread position: | 653-863 |
| Cow position: | chr28:31591094-31591306 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 164 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 654-863 |
| Cow position: | chr28:1385873-1385661 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 169 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 670-850 |
| Cow position: | chr28:9295802-9295625 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 47, 16 |
| Conread position: | 670-863 |
| Cow position: | chr28:9288499-9288694 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 691-863 |
| Cow position: | chr28:10067489-10067313 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 713-863 |
| Cow position: | chr28:24884450-24884600 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 742-863 |
| Cow position: | chr28:15998728-15998850 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 117, 0 |
Show alignments to all cow chromosomes.