Cow genome map
| Conread name: | Tra1-TCH01C100049 |
| Conread position: | 2-394 |
| Cow position: | chr3:19939886-19940303 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 120 |
| Conread position: | 2-394 |
| Cow position: | chr3:63002545-63002147 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 88 |
| Conread position: | 2-398 |
| Cow position: | chr3:46017041-46017469 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 68 |
| Conread position: | 4-208 |
| Cow position: | chr3:19945241-19945445 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 46, 81 |
| Conread position: | 4-295 |
| Cow position: | chr3:19720682-19720384 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 173 |
| Conread position: | 4-390 |
| Cow position: | chr3:15054675-15054296 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 91 |
| Conread position: | 4-394 |
| Cow position: | chr3:3524031-3524426 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 284 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 118, 36 |
| Conread position: | 4-394 |
| Cow position: | chr3:19755937-19755547 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 280 |
| Conread position: | 4-394 |
| Cow position: | chr3:40824388-40824807 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 232 |
| Conread position: | 4-394 |
| Cow position: | chr3:57483732-57483311 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 14-398 |
| Cow position: | chr3:77424639-77425022 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 20 |
| Conread position: | 19-390 |
| Cow position: | chr3:58948563-58948938 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 7, 75 |
| Conread position: | 20-394 |
| Cow position: | chr3:34029913-34029506 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 35-388 |
| Cow position: | chr3:47087336-47087701 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 243 |
| Conread position: | 35-392 |
| Cow position: | chr3:63255176-63255538 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 110, 247 |
| Conread position: | 35-394 |
| Cow position: | chr3:595174-595550 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 35 |
| Conread position: | 35-394 |
| Cow position: | chr3:72631099-72631477 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 36-394 |
| Cow position: | chr3:21181659-21181283 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 342 |
| Conread position: | 39-394 |
| Cow position: | chr3:5994046-5993666 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 19 |
| Conread position: | 47-394 |
| Cow position: | chr3:64823150-64823519 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 261 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 75, 70 |
| Conread position: | 47-397 |
| Cow position: | chr3:50916389-50916761 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 47-398 |
| Cow position: | chr3:18354957-18354603 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 28 |
| Conread position: | 75-394 |
| Cow position: | chr3:38867392-38867732 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 85-394 |
| Cow position: | chr3:3840425-3840102 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 245 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 71, 188 |
| Conread position: | 94-394 |
| Cow position: | chr3:51364693-51364374 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 154-398 |
| Cow position: | chr3:56327283-56327526 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 82, 11 |
| Conread position: | 182-394 |
| Cow position: | chr3:66621395-66621611 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 25, 7 |
| Conread position: | 206-394 |
| Cow position: | chr3:5952964-5952772 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 617-863 |
| Cow position: | chr3:6687168-6687414 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 95 |
| Conread position: | 628-863 |
| Cow position: | chr3:24354531-24354773 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 17, 147 |
| Conread position: | 630-859 |
| Cow position: | chr3:63240852-63240622 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 29 |
| Conread position: | 631-863 |
| Cow position: | chr3:3524402-3524638 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 631-863 |
| Cow position: | chr3:18462447-18462219 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 24, 170 |
| Conread position: | 631-863 |
| Cow position: | chr3:56146697-56146931 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 632-858 |
| Cow position: | chr3:2906368-2906136 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 633-863 |
| Cow position: | chr3:63255518-63255749 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 81, 28 |
| Conread position: | 637-863 |
| Cow position: | chr3:19799781-19799552 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 640-842 |
| Cow position: | chr3:47087686-47087881 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 74, 107 |
| Conread position: | 641-859 |
| Cow position: | chr3:3840115-3839896 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 171 |
| Conread position: | 641-863 |
| Cow position: | chr3:1742733-1742958 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 641-863 |
| Cow position: | chr3:2854044-2853825 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 12, 115 |
| Conread position: | 641-863 |
| Cow position: | chr3:2870190-2870415 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 641-863 |
| Cow position: | chr3:7157318-7157092 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 641-863 |
| Cow position: | chr3:16224286-16224512 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 131 |
| Conread position: | 641-863 |
| Cow position: | chr3:20382438-20382662 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 176 |
| Conread position: | 641-863 |
| Cow position: | chr3:30617518-30617297 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 14, 97 |
| Conread position: | 641-863 |
| Cow position: | chr3:32200419-32200643 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 33 |
| Conread position: | 641-863 |
| Cow position: | chr3:37970448-37970673 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 641-863 |
| Cow position: | chr3:42448517-42448742 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 641-863 |
| Cow position: | chr3:44925464-44925689 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr3:46859889-46859667 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 14, 46 |
| Conread position: | 641-863 |
| Cow position: | chr3:48229112-48228889 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 170 |
| Conread position: | 641-863 |
| Cow position: | chr3:52653259-52653037 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 66, 23 |
| Conread position: | 641-863 |
| Cow position: | chr3:64026733-64026511 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 14, 106 |
| Conread position: | 642-863 |
| Cow position: | chr3:5952784-5952560 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 648-859 |
| Cow position: | chr3:50916750-50916959 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 59, 127 |
| Conread position: | 648-863 |
| Cow position: | chr3:56327514-56327734 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 648-863 |
| Cow position: | chr3:74851737-74851522 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 66, 16 |
| Conread position: | 654-863 |
| Cow position: | chr3:6783784-6783995 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 659-863 |
| Cow position: | chr3:2918890-2919091 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 54 |
| Conread position: | 659-863 |
| Cow position: | chr3:51857270-51857064 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 665-853 |
| Cow position: | chr3:42053254-42053063 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 681-863 |
| Cow position: | chr3:64356522-64356339 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 33, 20 |
| Conread position: | 713-862 |
| Cow position: | chr3:29580085-29580234 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.