Cow genome map
| Conread name: | Tra1-TCH01C100049 |
| Conread position: | 2-391 |
| Cow position: | chr4:14820056-14819684 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 293 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 48, 114 |
| Conread position: | 4-301 |
| Cow position: | chr4:967274-966952 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 4-394 |
| Cow position: | chr4:1049453-1049045 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 74 |
| Conread position: | 4-394 |
| Cow position: | chr4:13494134-13494544 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 4-394 |
| Cow position: | chr4:16639417-16639828 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 273 |
| Conread position: | 4-394 |
| Cow position: | chr4:26876976-26876565 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 286 |
| Conread position: | 4-394 |
| Cow position: | chr4:44726401-44726796 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 30 |
| Conread position: | 4-397 |
| Cow position: | chr4:42405409-42405833 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 11 |
| Conread position: | 5-280 |
| Cow position: | chr4:65915838-65916130 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 36, 142 |
| Conread position: | 20-394 |
| Cow position: | chr4:6489543-6489148 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 349 |
| Conread position: | 20-394 |
| Cow position: | chr4:31564484-31564065 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 20-394 |
| Cow position: | chr4:43881927-43882323 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 362 |
| Conread position: | 35-394 |
| Cow position: | chr4:12240374-12240006 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 45 |
| Conread position: | 35-394 |
| Cow position: | chr4:12588174-12588546 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 204 |
| Conread position: | 35-394 |
| Cow position: | chr4:43318797-43318418 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 236 |
| Conread position: | 44-398 |
| Cow position: | chr4:14755814-14755449 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 107, 54 |
| Conread position: | 47-394 |
| Cow position: | chr4:67682048-67682415 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 80-398 |
| Cow position: | chr4:9355272-9355601 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 82, 33 |
| Conread position: | 90-391 |
| Cow position: | chr4:43672420-43672717 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 144, 57 |
| Conread position: | 136-394 |
| Cow position: | chr4:20067776-20067509 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 58, 138 |
| Conread position: | 183-396 |
| Cow position: | chr4:60627864-60627645 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 77, 45 |
| Conread position: | 195-394 |
| Cow position: | chr4:21359239-21359444 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 41, 178 |
| Conread position: | 209-394 |
| Cow position: | chr4:27334954-27335149 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 244-387 |
| Cow position: | chr4:54240340-54240480 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 631-859 |
| Cow position: | chr4:46200534-46200306 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 85, 28 |
| Conread position: | 638-863 |
| Cow position: | chr4:1929438-1929212 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 76, 21 |
| Conread position: | 639-858 |
| Cow position: | chr4:34178044-34177828 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 151 |
| Conread position: | 641-859 |
| Cow position: | chr4:4417262-4417477 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 74 |
| Conread position: | 641-863 |
| Cow position: | chr4:160362-160587 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr4:604835-605060 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 641-863 |
| Cow position: | chr4:827413-827638 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 641-863 |
| Cow position: | chr4:1952362-1952137 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 641-863 |
| Cow position: | chr4:5443620-5443395 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 130 |
| Conread position: | 641-863 |
| Cow position: | chr4:6567584-6567809 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr4:6865302-6865078 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr4:12588533-12588757 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 17, 146 |
| Conread position: | 641-863 |
| Cow position: | chr4:41955968-41956193 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr4:41960105-41960329 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 130 |
| Conread position: | 646-858 |
| Cow position: | chr4:9846996-9846783 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 646-859 |
| Cow position: | chr4:14139586-14139796 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 167 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 68, 148 |
| Conread position: | 647-863 |
| Cow position: | chr4:11109859-11109647 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 67, 37 |
| Conread position: | 648-863 |
| Cow position: | chr4:34183444-34183248 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 211, 53 |
| Conread position: | 650-863 |
| Cow position: | chr4:19005118-19004901 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 654-858 |
| Cow position: | chr4:16060498-16060702 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 42 |
| Conread position: | 654-862 |
| Cow position: | chr4:98998-98790 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 146 |
| Conread position: | 661-857 |
| Cow position: | chr4:64216456-64216265 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 53, 42 |
| Conread position: | 670-863 |
| Cow position: | chr4:6267956-6267761 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 159 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 683-863 |
| Cow position: | chr4:46666170-46666350 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 31, 7 |
| Conread position: | 689-863 |
| Cow position: | chr4:8702803-8702983 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 706-859 |
| Cow position: | chr4:43867465-43867619 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 8, 0 |
Show alignments to all cow chromosomes.