Cow genome map
| Conread name: | Tra1-TCH01C100049 |
| Conread position: | 2-174 |
| Cow position: | chr5:13046350-13046536 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 2-393 |
| Cow position: | chr5:45701215-45701630 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 130 |
| Conread position: | 2-398 |
| Cow position: | chr5:24151680-24152095 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 62 |
| Conread position: | 2-398 |
| Cow position: | chr5:29767029-29767448 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 111 |
| Conread position: | 4-285 |
| Cow position: | chr5:27197222-27197517 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 41, 110 |
| Conread position: | 4-391 |
| Cow position: | chr5:46004954-46004555 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 353 |
| Conread position: | 4-394 |
| Cow position: | chr5:4070110-4070539 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 4-394 |
| Cow position: | chr5:6154001-6153577 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 4-394 |
| Cow position: | chr5:34697506-34697918 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 333 |
| Conread position: | 4-394 |
| Cow position: | chr5:49519462-49519869 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 122 |
| Conread position: | 4-394 |
| Cow position: | chr5:51308958-51308539 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 133 |
| Conread position: | 4-394 |
| Cow position: | chr5:55628893-55629308 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 4-396 |
| Cow position: | chr5:46668848-46669247 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 119 |
| Conread position: | 5-394 |
| Cow position: | chr5:7274759-7275155 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 27 |
| Conread position: | 12-394 |
| Cow position: | chr5:50870538-50870938 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 41 |
| Conread position: | 20-394 |
| Cow position: | chr5:2915367-2915755 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 256 |
| Conread position: | 20-394 |
| Cow position: | chr5:57481621-57481218 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 215 |
| Conread position: | 36-397 |
| Cow position: | chr5:18273703-18274079 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 252 |
| Conread position: | 87-398 |
| Cow position: | chr5:47077991-47078312 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 220 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 52, 169 |
| Conread position: | 195-391 |
| Cow position: | chr5:13046769-13046971 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 161 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 199-394 |
| Cow position: | chr5:10919956-10920160 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 43, 109 |
| Conread position: | 217-394 |
| Cow position: | chr5:49223353-49223171 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 13, 123 |
| Conread position: | 619-859 |
| Cow position: | chr5:46669209-46669461 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 95, 38 |
| Conread position: | 630-858 |
| Cow position: | chr5:41527500-41527271 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 194 |
| Conread position: | 631-863 |
| Cow position: | chr5:23831021-23830788 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 84, 132 |
| Conread position: | 641-849 |
| Cow position: | chr5:34190222-34190439 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 641-858 |
| Cow position: | chr5:18665074-18665292 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 171 |
| Conread position: | 641-863 |
| Cow position: | chr5:10774955-10774730 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr5:12731407-12731182 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 130 |
| Conread position: | 641-863 |
| Cow position: | chr5:23959022-23958797 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 641-863 |
| Cow position: | chr5:32774073-32774298 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr5:46777701-46777926 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr5:53946138-53946361 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 14, 33 |
| Conread position: | 642-859 |
| Cow position: | chr5:5104525-5104743 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 646-844 |
| Cow position: | chr5:1340733-1340533 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 647-859 |
| Cow position: | chr5:40923340-40923147 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 653-859 |
| Cow position: | chr5:12681730-12681522 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 654-863 |
| Cow position: | chr5:18121160-18120949 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 654-863 |
| Cow position: | chr5:37378448-37378659 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 659-859 |
| Cow position: | chr5:20108228-20108429 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 665-863 |
| Cow position: | chr5:50870946-50871140 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 53, 32 |
| Conread position: | 665-863 |
| Cow position: | chr5:51744608-51744808 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 157 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 709-863 |
| Cow position: | chr5:58191385-58191227 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 713-859 |
| Cow position: | chr5:12642053-12641905 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 757-859 |
| Cow position: | chr5:37049229-37049331 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.