Cow genome map
| Conread name: | Tra1-TCH01C100049 |
| Conread position: | 2-394 |
| Cow position: | chr6:41553306-41553717 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 288 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 57, 45 |
| Conread position: | 2-397 |
| Cow position: | chr6:10250554-10250143 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 30 |
| Conread position: | 2-397 |
| Cow position: | chr6:10339581-10339176 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 113 |
| Conread position: | 2-398 |
| Cow position: | chr6:58065778-58066187 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 8 |
| Conread position: | 4-391 |
| Cow position: | chr6:27471622-27472031 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 254 |
| Conread position: | 4-393 |
| Cow position: | chr6:10632597-10633002 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 44, 122 |
| Conread position: | 4-394 |
| Cow position: | chr6:50565-50145 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 4-394 |
| Cow position: | chr6:2375740-2376138 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 29 |
| Conread position: | 4-394 |
| Cow position: | chr6:35419234-35418847 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 7 |
| Conread position: | 4-394 |
| Cow position: | chr6:35875670-35875252 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 338 |
| Conread position: | 4-394 |
| Cow position: | chr6:51731132-51731539 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 51 |
| Conread position: | 4-397 |
| Cow position: | chr6:66232858-66233267 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 4-398 |
| Cow position: | chr6:3888460-3888050 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 67 |
| Conread position: | 4-398 |
| Cow position: | chr6:48579946-48579539 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 356 |
| Conread position: | 7-388 |
| Cow position: | chr6:44262433-44262022 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 309 |
| Conread position: | 12-390 |
| Cow position: | chr6:58601533-58601933 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 79 |
| Conread position: | 13-394 |
| Cow position: | chr6:39910397-39910792 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 27 |
| Conread position: | 20-394 |
| Cow position: | chr6:8760237-8759839 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 21-398 |
| Cow position: | chr6:59617181-59617558 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 60 |
| Conread position: | 35-391 |
| Cow position: | chr6:27528915-27528562 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 121, 12 |
| Conread position: | 47-394 |
| Cow position: | chr6:13310264-13309920 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 75, 63 |
| Conread position: | 47-394 |
| Cow position: | chr6:28134010-28134363 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 40 |
| Conread position: | 47-394 |
| Cow position: | chr6:43792479-43792110 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 47-398 |
| Cow position: | chr6:15478266-15478636 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 23 |
| Conread position: | 134-394 |
| Cow position: | chr6:11723995-11723740 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 22, 75 |
| Conread position: | 229-397 |
| Cow position: | chr6:6185538-6185707 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 32, 52 |
| Conread position: | 246-394 |
| Cow position: | chr6:58461016-58460859 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 254-398 |
| Cow position: | chr6:24240719-24240870 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 628-863 |
| Cow position: | chr6:48579599-48579364 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 17, 129 |
| Conread position: | 628-863 |
| Cow position: | chr6:58028159-58028397 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 30, 104 |
| Conread position: | 630-861 |
| Cow position: | chr6:65907351-65907120 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 85, 16 |
| Conread position: | 631-863 |
| Cow position: | chr6:3150672-3150906 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 83, 15 |
| Conread position: | 632-863 |
| Cow position: | chr6:50636307-50636541 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 633-863 |
| Cow position: | chr6:26669424-26669192 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 97 |
| Conread position: | 641-860 |
| Cow position: | chr6:43792123-43791902 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 641-863 |
| Cow position: | chr6:184097-183872 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 641-863 |
| Cow position: | chr6:7139895-7139670 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr6:13309933-13309708 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr6:17596850-17596625 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr6:38273014-38273239 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr6:39910779-39911002 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 89 |
| Conread position: | 641-863 |
| Cow position: | chr6:45587397-45587618 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 19, 74 |
| Conread position: | 641-863 |
| Cow position: | chr6:57471113-57471338 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 646-863 |
| Cow position: | chr6:64717771-64717992 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 647-863 |
| Cow position: | chr6:18973008-18972793 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 50 |
| Conread position: | 648-863 |
| Cow position: | chr6:59617546-59617761 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 67, 125 |
| Conread position: | 650-863 |
| Cow position: | chr6:44262024-44261809 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 671-863 |
| Cow position: | chr6:44002148-44002342 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 156 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 672-863 |
| Cow position: | chr6:58460844-58460651 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 157 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 698-863 |
| Cow position: | chr6:38206792-38206955 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 150, 90 |
| Conread position: | 707-863 |
| Cow position: | chr6:17047853-17048011 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 713-863 |
| Cow position: | chr6:50111337-50111489 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 737-859 |
| Cow position: | chr6:12380775-12380897 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.