Cow genome map
| Conread name: | Tra1-TCH01C100049 |
| Conread position: | 2-296 |
| Cow position: | chr7:27606180-27605875 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 47, 250 |
| Conread position: | 2-398 |
| Cow position: | chr7:24878749-24878329 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 277 |
| Conread position: | 2-398 |
| Cow position: | chr7:59679983-59680403 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 127 |
| Conread position: | 2-398 |
| Cow position: | chr7:63386865-63387284 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 294 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 48, 368 |
| Conread position: | 4-394 |
| Cow position: | chr7:545979-546388 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 264 |
| Conread position: | 4-394 |
| Cow position: | chr7:5261791-5261363 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 280 |
| Conread position: | 4-394 |
| Cow position: | chr7:14214233-14213827 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 74 |
| Conread position: | 4-394 |
| Cow position: | chr7:20824468-20824864 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 267 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 97, 43 |
| Conread position: | 4-394 |
| Cow position: | chr7:21986559-21986952 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 71 |
| Conread position: | 4-394 |
| Cow position: | chr7:34487047-34487462 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 375 |
| Conread position: | 4-394 |
| Cow position: | chr7:53407739-53408122 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 269 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 201, 69 |
| Conread position: | 7-393 |
| Cow position: | chr7:25135999-25136396 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 28 |
| Conread position: | 13-391 |
| Cow position: | chr7:24807320-24806938 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 21 |
| Conread position: | 13-394 |
| Cow position: | chr7:20060637-20061036 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 27 |
| Conread position: | 13-398 |
| Cow position: | chr7:21126508-21126123 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 19 |
| Conread position: | 20-391 |
| Cow position: | chr7:5308965-5308569 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 321 |
| Conread position: | 20-394 |
| Cow position: | chr7:1371495-1371097 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 261 |
| Conread position: | 35-230 |
| Cow position: | chr7:54603517-54603718 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 121, 12 |
| Conread position: | 47-391 |
| Cow position: | chr7:67429755-67430111 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 222 |
| Conread position: | 47-394 |
| Cow position: | chr7:67800007-67800372 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 87 |
| Conread position: | 47-398 |
| Cow position: | chr7:995941-996296 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 122 |
| Conread position: | 51-388 |
| Cow position: | chr7:12720443-12720104 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 85, 226 |
| Conread position: | 68-396 |
| Cow position: | chr7:64350690-64351045 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 102-394 |
| Cow position: | chr7:8143747-8143427 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 159-394 |
| Cow position: | chr7:33405091-33404847 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 188 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 191-394 |
| Cow position: | chr7:60856720-60856514 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 5, 105 |
| Conread position: | 199-394 |
| Cow position: | chr7:65872257-65872060 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 142, 11 |
| Conread position: | 630-859 |
| Cow position: | chr7:14213849-14213626 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 85, 16 |
| Conread position: | 630-863 |
| Cow position: | chr7:31095737-31095503 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 25, 40 |
| Conread position: | 630-863 |
| Cow position: | chr7:54581384-54581618 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 16 |
| Conread position: | 631-863 |
| Cow position: | chr7:27788483-27788716 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 83, 15 |
| Conread position: | 631-863 |
| Cow position: | chr7:59685335-59685574 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 24, 64 |
| Conread position: | 631-863 |
| Cow position: | chr7:64351019-64351248 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 34 |
| Conread position: | 639-863 |
| Cow position: | chr7:3157002-3157234 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 212 |
| Conread position: | 640-863 |
| Cow position: | chr7:29368499-29368281 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 109, 51 |
| Conread position: | 641-863 |
| Cow position: | chr7:5261376-5261161 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 14, 64 |
| Conread position: | 641-863 |
| Cow position: | chr7:11462603-11462378 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr7:25441032-25441257 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 45, 38 |
| Conread position: | 641-863 |
| Cow position: | chr7:33785800-33786025 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 641-863 |
| Cow position: | chr7:52763821-52764046 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr7:55040950-55040725 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr7:60728918-60728696 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 17, 132 |
| Conread position: | 645-859 |
| Cow position: | chr7:49828792-49828580 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 28 |
| Conread position: | 646-863 |
| Cow position: | chr7:33333105-33333324 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 646-863 |
| Cow position: | chr7:42871684-42871903 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 646-863 |
| Cow position: | chr7:67676613-67676832 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 648-851 |
| Cow position: | chr7:996284-996486 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 73, 125 |
| Conread position: | 648-859 |
| Cow position: | chr7:49731019-49731231 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 654-863 |
| Cow position: | chr7:20797901-20797692 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 60, 108 |
| Conread position: | 688-859 |
| Cow position: | chr7:526530-526702 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 701-863 |
| Cow position: | chr7:949137-949304 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 740-859 |
| Cow position: | chr7:64247952-64247833 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.