Cow genome map
| Conread name: | Tra1-TCH01C100049 |
| Conread position: | 1-392 |
| Cow position: | chr8:5017497-5017914 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 339 |
| Conread position: | 2-252 |
| Cow position: | chr8:20136257-20135993 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 2-264 |
| Cow position: | chr8:12542587-12542313 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 45, 159 |
| Conread position: | 2-314 |
| Cow position: | chr8:49859447-49859120 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 160 |
| Conread position: | 2-391 |
| Cow position: | chr8:51857323-51857699 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 102 |
| Conread position: | 2-397 |
| Cow position: | chr8:50960284-50959871 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 187 |
| Conread position: | 2-398 |
| Cow position: | chr8:58185264-58184854 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 79 |
| Conread position: | 4-390 |
| Cow position: | chr8:41644352-41643955 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 129 |
| Conread position: | 4-391 |
| Cow position: | chr8:42158666-42158285 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 4-394 |
| Cow position: | chr8:25377302-25377715 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 114 |
| Conread position: | 4-394 |
| Cow position: | chr8:25523722-25524127 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 243 |
| Conread position: | 4-394 |
| Cow position: | chr8:25775352-25774925 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 295 |
| Conread position: | 4-394 |
| Cow position: | chr8:36635187-36634774 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 4-398 |
| Cow position: | chr8:8911811-8912223 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 29 |
| Conread position: | 4-398 |
| Cow position: | chr8:47887201-47887586 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 287 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 29, 125 |
| Conread position: | 6-398 |
| Cow position: | chr8:56883845-56884269 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 304 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 40, 147 |
| Conread position: | 10-388 |
| Cow position: | chr8:47674175-47674574 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 268 |
| Conread position: | 10-397 |
| Cow position: | chr8:15409123-15409525 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 139, 42 |
| Conread position: | 11-394 |
| Cow position: | chr8:7162225-7162633 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 5 |
| Conread position: | 12-394 |
| Cow position: | chr8:47075488-47075892 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 123 |
| Conread position: | 20-394 |
| Cow position: | chr8:4687739-4688136 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 101 |
| Conread position: | 20-394 |
| Cow position: | chr8:33589714-33590118 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 270 |
| Conread position: | 20-394 |
| Cow position: | chr8:46051518-46051921 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 34-391 |
| Cow position: | chr8:59261570-59261212 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 134 |
| Conread position: | 35-394 |
| Cow position: | chr8:32318193-32317813 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 35-394 |
| Cow position: | chr8:39194858-39194478 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 35 |
| Conread position: | 36-394 |
| Cow position: | chr8:3785997-3786365 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 167 |
| Conread position: | 40-398 |
| Cow position: | chr8:9539326-9538967 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 273 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 25, 11 |
| Conread position: | 56-388 |
| Cow position: | chr8:6726617-6726259 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 45, 234 |
| Conread position: | 121-394 |
| Cow position: | chr8:6764847-6764554 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 159-359 |
| Cow position: | chr8:42469168-42469360 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 179-394 |
| Cow position: | chr8:12313906-12313668 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 182-394 |
| Cow position: | chr8:50995303-50995522 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 178 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 191-393 |
| Cow position: | chr8:14583452-14583245 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 5, 100 |
| Conread position: | 202-394 |
| Cow position: | chr8:35470835-35471037 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 242-394 |
| Cow position: | chr8:49296596-49296451 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 129, 91 |
| Conread position: | 630-859 |
| Cow position: | chr8:12804495-12804718 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 630-863 |
| Cow position: | chr8:12542215-12541970 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 107, 81 |
| Conread position: | 631-859 |
| Cow position: | chr8:1347536-1347308 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 26 |
| Conread position: | 631-863 |
| Cow position: | chr8:11803528-11803757 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 27, 53 |
| Conread position: | 631-863 |
| Cow position: | chr8:45145593-45145357 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 28 |
| Conread position: | 633-863 |
| Cow position: | chr8:2386903-2387136 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 641-863 |
| Cow position: | chr8:2887475-2887699 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 40 |
| Conread position: | 641-863 |
| Cow position: | chr8:10750073-10750294 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 144 |
| Conread position: | 641-863 |
| Cow position: | chr8:24914599-24914373 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 641-863 |
| Cow position: | chr8:32630310-32630086 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 641-863 |
| Cow position: | chr8:33325773-33325998 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 130 |
| Conread position: | 641-863 |
| Cow position: | chr8:47068094-47067869 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 642-863 |
| Cow position: | chr8:47947810-47948032 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 643-843 |
| Cow position: | chr8:23134876-23134675 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 648-863 |
| Cow position: | chr8:48103574-48103789 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 162, 66 |
| Conread position: | 648-863 |
| Cow position: | chr8:50959882-50959666 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 652-863 |
| Cow position: | chr8:29923616-29923404 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 11 |
| Conread position: | 654-863 |
| Cow position: | chr8:8516862-8516651 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 165 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 657-859 |
| Cow position: | chr8:53428226-53428430 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 27, 48 |
| Conread position: | 659-863 |
| Cow position: | chr8:37932837-37933043 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 669-859 |
| Cow position: | chr8:8309968-8310153 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 45, 108 |
| Conread position: | 670-863 |
| Cow position: | chr8:50432374-50432197 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 189, 43 |
| Conread position: | 671-863 |
| Cow position: | chr8:58184852-58184668 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 66, 35 |
| Conread position: | 682-863 |
| Cow position: | chr8:9944156-9943979 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 32, 114 |
| Conread position: | 696-859 |
| Cow position: | chr8:42158240-42158076 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 18, 48 |
| Conread position: | 745-863 |
| Cow position: | chr8:38194260-38194379 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 114, 0 |
Show alignments to all cow chromosomes.