Cow genome map
| Conread name: | Tra1-TCH01C100049 |
| Conread position: | 1-393 |
| Cow position: | chr9:50698271-50698685 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 297 |
| Conread position: | 2-398 |
| Cow position: | chr9:44819117-44819532 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 100 |
| Conread position: | 4-331 |
| Cow position: | chr9:52033671-52034006 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 59, 256 |
| Conread position: | 4-389 |
| Cow position: | chr9:25188070-25188480 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 271 |
| Conread position: | 4-394 |
| Cow position: | chr9:22654547-22654967 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 4-394 |
| Cow position: | chr9:37970224-37969821 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 29 |
| Conread position: | 4-394 |
| Cow position: | chr9:59481825-59481409 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 52 |
| Conread position: | 4-397 |
| Cow position: | chr9:18508851-18508432 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 5-394 |
| Cow position: | chr9:1981246-1981648 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 287 |
| Conread position: | 5-397 |
| Cow position: | chr9:4282939-4283366 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 8-398 |
| Cow position: | chr9:49303682-49303278 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 284 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 42, 147 |
| Conread position: | 13-394 |
| Cow position: | chr9:4533481-4533882 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 255 |
| Conread position: | 20-394 |
| Cow position: | chr9:3309614-3310002 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 117 |
| Conread position: | 20-394 |
| Cow position: | chr9:19158552-19158145 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 20-394 |
| Cow position: | chr9:28022793-28023188 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 147 |
| Conread position: | 20-394 |
| Cow position: | chr9:29627769-29627364 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 20-394 |
| Cow position: | chr9:37161826-37161426 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 260 |
| Conread position: | 34-398 |
| Cow position: | chr9:4666189-4666571 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 269 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 25, 37 |
| Conread position: | 35-394 |
| Cow position: | chr9:42310688-42311066 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 276 |
| Conread position: | 47-394 |
| Cow position: | chr9:51181155-51180791 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 223 |
| Conread position: | 51-394 |
| Cow position: | chr9:38677170-38677532 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 67-398 |
| Cow position: | chr9:828066-827713 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 86-394 |
| Cow position: | chr9:17901502-17901186 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 13 |
| Conread position: | 137-394 |
| Cow position: | chr9:27036018-27036290 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 28, 66 |
| Conread position: | 191-398 |
| Cow position: | chr9:12912954-12913173 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 45, 104 |
| Conread position: | 211-398 |
| Cow position: | chr9:43664915-43665099 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 126, 31 |
| Conread position: | 623-863 |
| Cow position: | chr9:29789329-29789088 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 91, 23 |
| Conread position: | 631-863 |
| Cow position: | chr9:30673744-30673979 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 633-863 |
| Cow position: | chr9:64015303-64015072 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 65 |
| Conread position: | 638-849 |
| Cow position: | chr9:3224266-3224056 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 78, 22 |
| Conread position: | 640-854 |
| Cow position: | chr9:35594708-35594492 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 46, 88 |
| Conread position: | 641-863 |
| Cow position: | chr9:3309989-3310214 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr9:17304600-17304376 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 17, 104 |
| Conread position: | 641-863 |
| Cow position: | chr9:26567978-26568195 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 17, 40 |
| Conread position: | 641-863 |
| Cow position: | chr9:31066093-31066318 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr9:38677519-38677744 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 641-863 |
| Cow position: | chr9:47043335-47043560 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 643-863 |
| Cow position: | chr9:22436331-22436550 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 74, 141 |
| Conread position: | 646-863 |
| Cow position: | chr9:13474394-13474177 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 167 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 68, 138 |
| Conread position: | 647-859 |
| Cow position: | chr9:25188472-25188684 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 67, 175 |
| Conread position: | 648-859 |
| Cow position: | chr9:28000901-28001119 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 649-863 |
| Cow position: | chr9:827724-827509 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 171 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 65, 22 |
| Conread position: | 654-863 |
| Cow position: | chr9:2212529-2212739 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 673-863 |
| Cow position: | chr9:43665080-43665267 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 186, 21 |
| Conread position: | 685-863 |
| Cow position: | chr9:56303032-56302852 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 145 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 697-863 |
| Cow position: | chr9:6709390-6709558 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 713-863 |
| Cow position: | chr9:3804802-3804949 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 146, 66 |
| Conread position: | 718-863 |
| Cow position: | chr9:2000695-2000550 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 747-863 |
| Cow position: | chr9:52721918-52722035 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 761-863 |
| Cow position: | chr9:31090674-31090776 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.