Cow genome map
| Conread name: | Tra1-TCH01C100049 |
| Conread position: | 2-394 |
| Cow position: | chrX:1547854-1548274 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 338 |
| Conread position: | 2-397 |
| Cow position: | chrX:18535327-18535713 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 180 |
| Conread position: | 4-391 |
| Cow position: | chrX:13182248-13181861 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 44, 105 |
| Conread position: | 4-394 |
| Cow position: | chrX:6872193-6871780 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 114 |
| Conread position: | 4-394 |
| Cow position: | chrX:12314877-12314467 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 249 |
| Conread position: | 4-394 |
| Cow position: | chrX:23277904-23278318 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 74 |
| Conread position: | 4-394 |
| Cow position: | chrX:29286311-29286725 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 270 |
| Conread position: | 4-398 |
| Cow position: | chrX:41888118-41887713 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 46, 119 |
| Conread position: | 5-392 |
| Cow position: | chrX:21059662-21060059 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 60 |
| Conread position: | 5-398 |
| Cow position: | chrX:12668864-12668441 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 290 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 142, 379 |
| Conread position: | 6-398 |
| Cow position: | chrX:21589871-21590282 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 344 |
| Conread position: | 10-394 |
| Cow position: | chrX:21491038-21491454 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 295 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 12, 291 |
| Conread position: | 19-394 |
| Cow position: | chrX:5335581-5335185 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 13 |
| Conread position: | 20-391 |
| Cow position: | chrX:26757721-26757338 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 238 |
| Conread position: | 20-394 |
| Cow position: | chrX:31199455-31199853 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 266 |
| Conread position: | 20-396 |
| Cow position: | chrX:15600054-15600445 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 259 |
| Conread position: | 35-390 |
| Cow position: | chrX:26528891-26529255 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 194 |
| Conread position: | 35-394 |
| Cow position: | chrX:2481715-2481335 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 104 |
| Conread position: | 35-394 |
| Cow position: | chrX:15126308-15125935 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 14 |
| Conread position: | 35-394 |
| Cow position: | chrX:26766284-26765902 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 35-394 |
| Cow position: | chrX:30183020-30182633 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 35 |
| Conread position: | 43-394 |
| Cow position: | chrX:2577350-2577719 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 67 |
| Conread position: | 47-394 |
| Cow position: | chrX:39563005-39562657 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 110 |
| Conread position: | 48-398 |
| Cow position: | chrX:12183867-12184242 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 57 |
| Conread position: | 51-398 |
| Cow position: | chrX:29885922-29886288 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 158-393 |
| Cow position: | chrX:15144864-15144607 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 182-397 |
| Cow position: | chrX:27495786-27496012 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 24, 185 |
| Conread position: | 602-863 |
| Cow position: | chrX:42477572-42477308 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 629-863 |
| Cow position: | chrX:27962117-27962337 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 23, 52 |
| Conread position: | 630-863 |
| Cow position: | chrX:16780556-16780789 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 16 |
| Conread position: | 631-859 |
| Cow position: | chrX:32327436-32327664 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 116 |
| Conread position: | 631-863 |
| Cow position: | chrX:14596121-14596354 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 26 |
| Conread position: | 631-863 |
| Cow position: | chrX:16361846-16361613 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 83, 26 |
| Conread position: | 631-863 |
| Cow position: | chrX:17052819-17053058 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 83, 26 |
| Conread position: | 631-863 |
| Cow position: | chrX:24771588-24771355 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 26 |
| Conread position: | 632-863 |
| Cow position: | chrX:41849938-41849717 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 82, 57 |
| Conread position: | 633-863 |
| Cow position: | chrX:6281506-6281276 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 23 |
| Conread position: | 633-863 |
| Cow position: | chrX:37850405-37850638 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 637-863 |
| Cow position: | chrX:13075423-13075196 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 8, 76 |
| Conread position: | 639-863 |
| Cow position: | chrX:2534792-2534577 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 75, 20 |
| Conread position: | 639-863 |
| Cow position: | chrX:16276929-16277156 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 641-854 |
| Cow position: | chrX:16700977-16701188 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 641-859 |
| Cow position: | chrX:28586263-28586483 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 641-863 |
| Cow position: | chrX:673923-673700 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 641-863 |
| Cow position: | chrX:11423153-11423378 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 641-863 |
| Cow position: | chrX:11463765-11463540 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 641-863 |
| Cow position: | chrX:12184223-12184447 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 641-863 |
| Cow position: | chrX:13095976-13095757 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 220, 16 |
| Conread position: | 641-863 |
| Cow position: | chrX:28521323-28521098 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 14, 130 |
| Conread position: | 641-863 |
| Cow position: | chrX:30012281-30012506 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 641-863 |
| Cow position: | chrX:30068558-30068335 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 641-863 |
| Cow position: | chrX:39562670-39562445 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 648-859 |
| Cow position: | chrX:29792743-29792532 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 66, 40 |
| Conread position: | 648-863 |
| Cow position: | chrX:15600435-15600652 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 648-863 |
| Cow position: | chrX:23020585-23020802 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 652-863 |
| Cow position: | chrX:26398832-26398619 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 654-859 |
| Cow position: | chrX:22617909-22617703 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 654-862 |
| Cow position: | chrX:36136268-36136068 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 60, 126 |
| Conread position: | 654-863 |
| Cow position: | chrX:35531151-35531362 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 659-863 |
| Cow position: | chrX:12344242-12344448 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 161 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 660-863 |
| Cow position: | chrX:28664697-28664902 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 670-859 |
| Cow position: | chrX:504899-504709 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 670-863 |
| Cow position: | chrX:1942054-1941859 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 679-859 |
| Cow position: | chrX:21791935-21792116 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 691-862 |
| Cow position: | chrX:29940565-29940737 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 697-859 |
| Cow position: | chrX:45376654-45376486 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 718-859 |
| Cow position: | chrX:31726482-31726622 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 724-854 |
| Cow position: | chrX:30058564-30058692 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 748-863 |
| Cow position: | chrX:3142110-3142225 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.