Cow genome map


           Conread name:
           Tra1-TCH01C100049
        

               Conread position:
               2-394
               

               Cow position:
               
               

               Alignm length:
               422
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 338
               

               Conread position:
               2-397
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 180
               

               Conread position:
               4-391
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               274
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               44, 105
               

               Conread position:
               4-394
               

               Cow position:
               
               

               Alignm length:
               419
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 114
               

               Conread position:
               4-394
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 249
               

               Conread position:
               4-394
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 74
               

               Conread position:
               4-394
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 270
               

               Conread position:
               4-398
               

               Cow position:
               
               

               Alignm length:
               412
               

               Alignm identity:
               265
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               46, 119
               

               Conread position:
               5-392
               

               Cow position:
               
               

               Alignm length:
               409
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 60
               

               Conread position:
               5-398
               

               Cow position:
               
               

               Alignm length:
               425
               

               Alignm identity:
               290
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               142, 379
               

               Conread position:
               6-398
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 344
               

               Conread position:
               10-394
               

               Cow position:
               
               

               Alignm length:
               421
               

               Alignm identity:
               295
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               12, 291
               

               Conread position:
               19-394
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 13
               

               Conread position:
               20-391
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 238
               

               Conread position:
               20-394
               

               Cow position:
               
               

               Alignm length:
               403
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 266
               

               Conread position:
               20-396
               

               Cow position:
               
               

               Alignm length:
               397
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 259
               

               Conread position:
               35-390
               

               Cow position:
               
               

               Alignm length:
               366
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 194
               

               Conread position:
               35-394
               

               Cow position:
               
               

               Alignm length:
               382
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 104
               

               Conread position:
               35-394
               

               Cow position:
               
               

               Alignm length:
               377
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 14
               

               Conread position:
               35-394
               

               Cow position:
               
               

               Alignm length:
               383
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               35-394
               

               Cow position:
               
               

               Alignm length:
               391
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 35
               

               Conread position:
               43-394
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 67
               

               Conread position:
               47-394
               

               Cow position:
               
               

               Alignm length:
               364
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 110
               

               Conread position:
               48-398
               

               Cow position:
               
               

               Alignm length:
               380
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 57
               

               Conread position:
               51-398
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               158-393
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               182-397
               

               Cow position:
               
               

               Alignm length:
               228
               

               Alignm identity:
               178
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               24, 185
               

               Conread position:
               602-863
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               629-863
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               23, 52
               

               Conread position:
               630-863
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 16
               

               Conread position:
               631-859
               

               Cow position:
               
               

               Alignm length:
               233
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 116
               

               Conread position:
               631-863
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 26
               

               Conread position:
               631-863
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               176
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               83, 26
               

               Conread position:
               631-863
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               181
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               83, 26
               

               Conread position:
               631-863
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 26
               

               Conread position:
               632-863
               

               Cow position:
               
               

               Alignm length:
               234
               

               Alignm identity:
               182
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               82, 57
               

               Conread position:
               633-863
               

               Cow position:
               
               

               Alignm length:
               233
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 23
               

               Conread position:
               633-863
               

               Cow position:
               
               

               Alignm length:
               234
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               637-863
               

               Cow position:
               
               

               Alignm length:
               231
               

               Alignm identity:
               179
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               8, 76
               

               Conread position:
               639-863
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               175
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               75, 20
               

               Conread position:
               639-863
               

               Cow position:
               
               

               Alignm length:
               228
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               641-854
               

               Cow position:
               
               

               Alignm length:
               216
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               17, 38
               

               Conread position:
               641-859
               

               Cow position:
               
               

               Alignm length:
               221
               

               Alignm identity:
               168
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               641-863
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 35
               

               Conread position:
               641-863
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               641-863
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               641-863
               

               Cow position:
               
               

               Alignm length:
               225
               

               Alignm identity:
               168
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               641-863
               

               Cow position:
               
               

               Alignm length:
               224
               

               Alignm identity:
               174
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               220, 16
               

               Conread position:
               641-863
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               14, 130
               

               Conread position:
               641-863
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               641-863
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               171
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               21, 32
               

               Conread position:
               641-863
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               173
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               648-859
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               66, 40
               

               Conread position:
               648-863
               

               Cow position:
               
               

               Alignm length:
               218
               

               Alignm identity:
               166
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               648-863
               

               Cow position:
               
               

               Alignm length:
               218
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               652-863
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               174
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               654-859
               

               Cow position:
               
               

               Alignm length:
               207
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               654-862
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               60, 126
               

               Conread position:
               654-863
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               169
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               659-863
               

               Cow position:
               
               

               Alignm length:
               207
               

               Alignm identity:
               161
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               660-863
               

               Cow position:
               
               

               Alignm length:
               206
               

               Alignm identity:
               163
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               670-859
               

               Cow position:
               
               

               Alignm length:
               191
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               670-863
               

               Cow position:
               
               

               Alignm length:
               196
               

               Alignm identity:
               158
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               679-859
               

               Cow position:
               
               

               Alignm length:
               182
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               691-862
               

               Cow position:
               
               

               Alignm length:
               173
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               697-859
               

               Cow position:
               
               

               Alignm length:
               169
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               718-859
               

               Cow position:
               
               

               Alignm length:
               142
               

               Alignm identity:
               106
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               724-854
               

               Cow position:
               
               

               Alignm length:
               131
               

               Alignm identity:
               103
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               748-863
               

               Cow position:
               
               

               Alignm length:
               116
               

               Alignm identity:
               90
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.