Cow genome map

Conread name: Tra1-TCH01C100080

Conread position: 1-164
Cow position: chr28:8140563-8140399 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 101, 66

Conread position: 1-164
Cow position: chr28:10172336-10172497 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 1-165
Cow position: chr28:23410242-23410409 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 135
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 33, 72

Conread position: 1-165
Cow position: chr28:27218403-27218240 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 104, 25

Conread position: 2-165
Cow position: chr28:21502472-21502311 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 108, 66

Conread position: 2-174
Cow position: chr28:2524022-2523847 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 101, 16

Conread position: 3-140
Cow position: chr28:20397291-20397430 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 96, 64

Conread position: 3-145
Cow position: chr28:4765755-4765611 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 27, 67

Conread position: 3-146
Cow position: chr28:4823683-4823541 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 65, 0

Conread position: 3-149
Cow position: chr28:20759623-20759770 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 100, 10

Conread position: 3-157
Cow position: chr28:4841311-4841474 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 31, 71

Conread position: 3-158
Cow position: chr28:19564149-19564307 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 96, 66

Conread position: 3-159
Cow position: chr28:3160874-3161032 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 128
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 100, 64

Conread position: 3-162
Cow position: chr28:4643691-4643850 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 94, 64

Conread position: 3-164
Cow position: chr28:7372043-7372205 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 100, 70

Conread position: 3-164
Cow position: chr28:11307439-11307591 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 3-164
Cow position: chr28:18186635-18186471 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 100, 68

Conread position: 3-164
Cow position: chr28:21868536-21868372 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 119
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 94, 66

Conread position: 3-164
Cow position: chr28:23676217-23676057 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 100, 66

Conread position: 3-164
Cow position: chr28:33163385-33163547 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 100, 40

Conread position: 3-165
Cow position: chr28:616465-616299 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 98, 68

Conread position: 3-165
Cow position: chr28:2752415-2752579 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 103, 65

Conread position: 3-165
Cow position: chr28:3078603-3078765 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 101, 18

Conread position: 3-165
Cow position: chr28:3914796-3914627 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 100, 0

Conread position: 3-165
Cow position: chr28:4307818-4307988 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 91, 68

Conread position: 3-165
Cow position: chr28:4881161-4881321 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 135
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 65, 0

Conread position: 3-165
Cow position: chr28:5144442-5144602 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 100, 68

Conread position: 3-165
Cow position: chr28:7008899-7009061 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 99, 68

Conread position: 3-165
Cow position: chr28:7388693-7388852 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 100, 41

Conread position: 3-165
Cow position: chr28:8408813-8408650 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 129
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 96, 68

Conread position: 3-165
Cow position: chr28:11346408-11346568 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 100, 63

Conread position: 3-165
Cow position: chr28:11426462-11426626 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 102, 70

Conread position: 3-165
Cow position: chr28:18354254-18354407 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 36, 0

Conread position: 3-165
Cow position: chr28:18625313-18625145 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 88, 64

Conread position: 3-165
Cow position: chr28:20313356-20313191 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 134
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 96, 65

Conread position: 3-165
Cow position: chr28:21355310-21355139 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 95, 65

Conread position: 3-165
Cow position: chr28:21380960-21380794 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 133
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 100, 65

Conread position: 3-165
Cow position: chr28:21598173-21598338 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 100, 70

Conread position: 3-165
Cow position: chr28:25677262-25677431 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 55, 66

Conread position: 3-165
Cow position: chr28:25806652-25806488 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 96, 65

Conread position: 3-165
Cow position: chr28:26103781-26103624 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 133
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 65, 40

Conread position: 3-165
Cow position: chr28:26719422-26719266 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 68, 0

Conread position: 3-165
Cow position: chr28:26743705-26743539 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 133
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 100, 63

Conread position: 3-165
Cow position: chr28:26922289-26922451 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 129
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 96, 64

Conread position: 3-165
Cow position: chr28:26982659-26982821 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 130
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 93, 64

Conread position: 3-165
Cow position: chr28:27161248-27161412 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 136
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 100, 15

Conread position: 3-165
Cow position: chr28:32365923-32365758 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 132
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 96, 68

Conread position: 3-165
Cow position: chr28:33052116-33051944 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 49, 69

Conread position: 3-165
Cow position: chr28:34230307-34230147 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 96, 64

Conread position: 3-166
Cow position: chr28:3449382-3449216 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 100, 65

Conread position: 3-166
Cow position: chr28:11866586-11866752 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 100, 64

Conread position: 3-166
Cow position: chr28:12672386-12672548 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 100, 65

Conread position: 3-166
Cow position: chr28:24706976-24706818 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 3-166
Cow position: chr28:31109925-31110089 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 89, 64

Conread position: 3-166
Cow position: chr28:34247950-34248108 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 3-169
Cow position: chr28:7350733-7350569 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 70, 0

Conread position: 3-170
Cow position: chr28:17601796-17601963 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 92, 68

Conread position: 3-180
Cow position: chr28:5792787-5792606 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 95, 65

Conread position: 3-180
Cow position: chr28:7512505-7512687 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 132
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 88, 61

Conread position: 3-181
Cow position: chr28:19222072-19222251 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 137
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 95, 64

Conread position: 3-182
Cow position: chr28:4282412-4282590 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 100, 48

Conread position: 4-148
Cow position: chr28:25399947-25399805 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 105, 40

Conread position: 4-164
Cow position: chr28:5931430-5931269 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 131
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 95, 38

Conread position: 4-164
Cow position: chr28:25249432-25249270 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 88, 63

Conread position: 4-165
Cow position: chr28:1632579-1632739 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 102, 58

Conread position: 4-165
Cow position: chr28:4355625-4355471 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 84, 65

Conread position: 4-165
Cow position: chr28:11786639-11786796 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 52, 64

Conread position: 4-165
Cow position: chr28:13474378-13474216 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 99, 69

Conread position: 4-165
Cow position: chr28:15263640-15263801 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 88, 18

Conread position: 4-165
Cow position: chr28:19025927-19026096 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 90, 65

Conread position: 4-165
Cow position: chr28:30746652-30746812 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 134
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 90, 67

Conread position: 4-165
Cow position: chr28:32174707-32174545 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 50, 66

Conread position: 4-172
Cow position: chr28:662184-662017 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 93, 65

Conread position: 4-172
Cow position: chr28:30865495-30865328 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 101, 33

Conread position: 6-165
Cow position: chr28:23007654-23007818 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 97, 65

Conread position: 8-165
Cow position: chr28:3726958-3726799 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 92, 41

Conread position: 9-165
Cow position: chr28:2899062-2898914 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 59, 0

Conread position: 9-165
Cow position: chr28:13865915-13865758 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 130
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 90, 36

Conread position: 9-180
Cow position: chr28:5827023-5826855 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 138
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 94, 59

Conread position: 10-165
Cow position: chr28:751299-751146 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 11-151
Cow position: chr28:17012223-17012362 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 57, 0

Conread position: 11-165
Cow position: chr28:3011200-3011357 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 98, 26

Conread position: 11-165
Cow position: chr28:8347802-8347647 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 88, 57

Conread position: 11-165
Cow position: chr28:10053254-10053417 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 47, 61

Conread position: 11-165
Cow position: chr28:11817896-11818047 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 88, 56

Conread position: 11-165
Cow position: chr28:34430352-34430506 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 107, 57

Conread position: 11-166
Cow position: chr28:9100004-9099849 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 92, 17

Conread position: 13-165
Cow position: chr28:8147795-8147946 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 86, 7

Conread position: 13-165
Cow position: chr28:11559563-11559718 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 90, 53

Conread position: 13-180
Cow position: chr28:7548989-7549160 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 90, 60

Conread position: 17-165
Cow position: chr28:26685182-26685030 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 85, 50

Conread position: 27-165
Cow position: chr28:23447769-23447908 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 76, 41

Conread position: 37-165
Cow position: chr28:23724417-23724539 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 43-164
Cow position: chr28:17288255-17288135 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 44-164
Cow position: chr28:1538204-1538088 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 46-166
Cow position: chr28:28903627-28903753 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 53, 22

Conread position: 75-166
Cow position: chr28:22739800-22739707 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 81
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 28, 0

Show alignments to all cow chromosomes.