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Cow genome map

           
Conread name:
           
Tra1-TCH01C100080
        

               
Conread position:
               
1-154
               

               
Cow position:
               
chr9:4580451-4580302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr9:32669994-32669830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
98, 67
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr9:5500806-5500976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
102, 70
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr9:43870928-43871097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
102, 67
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr9:44396615-44396777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr9:55075175-55075015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
108, 42
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr9:61997650-61997481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
33, 10
               

               
Conread position:
               
1-166
               

               
Cow position:
               
chr9:5509677-5509841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
98, 66
               

               
Conread position:
               
1-166
               

               
Cow position:
               
chr9:33114299-33114466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
98, 54
               

               
Conread position:
               
1-166
               

               
Cow position:
               
chr9:34283906-34284067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
93, 66
               

               
Conread position:
               
1-166
               

               
Cow position:
               
chr9:37069606-37069450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
16, 69
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr9:8998302-8998491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
102, 70
               

               
Conread position:
               
2-164
               

               
Cow position:
               
chr9:50139239-50139402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
66, 148
               

               
Conread position:
               
3-115
               

               
Cow position:
               
chr9:24652359-24652470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
3-134
               

               
Cow position:
               
chr9:5110813-5110947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
96, 63
               

               
Conread position:
               
3-141
               

               
Cow position:
               
chr9:23797191-23797331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
99, 66
               

               
Conread position:
               
3-145
               

               
Cow position:
               
chr9:41781609-41781752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
3-147
               

               
Cow position:
               
chr9:56032360-56032218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
3-151
               

               
Cow position:
               
chr9:29819673-29819820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
3-153
               

               
Cow position:
               
chr9:4646370-4646222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
3-154
               

               
Cow position:
               
chr9:40776753-40776905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
99, 64
               

               
Conread position:
               
3-156
               

               
Cow position:
               
chr9:24872791-24872945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
100, 39
               

               
Conread position:
               
3-158
               

               
Cow position:
               
chr9:1729719-1729560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
3-158
               

               
Cow position:
               
chr9:10650344-10650190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
111, 15
               

               
Conread position:
               
3-158
               

               
Cow position:
               
chr9:12226023-12225866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
96, 65
               

               
Conread position:
               
3-158
               

               
Cow position:
               
chr9:20091001-20091159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
59, 67
               

               
Conread position:
               
3-158
               

               
Cow position:
               
chr9:26310461-26310620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
96, 68
               

               
Conread position:
               
3-158
               

               
Cow position:
               
chr9:43443760-43443913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
100, 31
               

               
Conread position:
               
3-158
               

               
Cow position:
               
chr9:49709802-49709955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
96, 37
               

               
Conread position:
               
3-158
               

               
Cow position:
               
chr9:55287934-55287780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
101, 40
               

               
Conread position:
               
3-160
               

               
Cow position:
               
chr9:23788394-23788551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
100, 59
               

               
Conread position:
               
3-160
               

               
Cow position:
               
chr9:23956025-23955870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
3-160
               

               
Cow position:
               
chr9:46664783-46664935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
3-162
               

               
Cow position:
               
chr9:15805968-15805804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 64
               

               
Conread position:
               
3-162
               

               
Cow position:
               
chr9:30477820-30477660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
101, 64
               

               
Conread position:
               
3-162
               

               
Cow position:
               
chr9:38645389-38645227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
100, 20
               

               
Conread position:
               
3-162
               

               
Cow position:
               
chr9:42478527-42478367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
92, 65
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chr9:1751293-1751454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
101, 65
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chr9:11319679-11319517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
91, 66
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chr9:19903037-19903196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
89, 64
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chr9:32676632-32676796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
96, 63
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chr9:33411616-33411460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chr9:38941477-38941315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
96, 65
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr9:4268027-4267866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
95, 64
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr9:5327213-5327373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr9:5456220-5456060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr9:7634226-7634391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
97, 68
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr9:9443646-9443486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
100, 63
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr9:9552045-9552210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
100, 68
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr9:9723921-9723766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr9:12910446-12910284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
109, 70
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr9:17411238-17411074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
96, 68
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr9:26279214-26279054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr9:47500257-47500092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 64
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr9:49293188-49293028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:1520785-1520619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
32, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:1972903-1973060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
96, 41
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:3070457-3070302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
82, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:3220091-3220255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
110, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:3774120-3774279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
100, 34
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:4263135-4262974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
78, 60
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:4630059-4630223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:5836104-5836273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
31, 73
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:6934118-6933955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
107, 36
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:8337982-8338146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
96, 68
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:8534735-8534572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
99, 64
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:9311813-9311978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
101, 64
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:9753436-9753275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
104, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:10819873-10819714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
100, 63
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:11304120-11303963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
100, 40
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:17310607-17310444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
96, 41
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:17518534-17518372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
107, 64
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:17928712-17928878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
96, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:19493511-19493344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:19714035-19714193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
89, 64
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:22114680-22114516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
103, 57
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:22152130-22151964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
96, 59
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:22318304-22318469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
49, 71
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:25546595-25546757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
100, 68
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:28354472-28354637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:28726769-28726602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
99, 68
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:30402470-30402302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
118, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:32307276-32307118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:32815607-32815760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:33597941-33598099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:33940560-33940723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
44, 34
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:34468623-34468465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
109, 68
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:35028210-35028050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 66
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:35167131-35167290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
92, 64
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:35904790-35904627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
100, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:39681294-39681458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
100, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:40005429-40005594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
104, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:40215202-40215360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
120, 28
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:41282970-41283132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
100, 62
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:41679702-41679864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
91, 62
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:42264168-42264325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
32, 66
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:42446028-42445861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
100, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:49416942-49417105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
100, 64
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:50543473-50543304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 67
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:51566540-51566376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:51720942-51720784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
102, 62
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:52839925-52839768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:63745770-63745929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
101, 40
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr9:64050606-64050442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
107, 65
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chr9:28392070-28391916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chr9:28947817-28947974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
100, 40
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chr9:34697344-34697186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
96, 31
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chr9:47906327-47906161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
29, 66
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chr9:52513493-52513333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
96, 65
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chr9:54528469-54528631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
100, 40
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chr9:60080857-60081025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
30, 45
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chr9:62668203-62668371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
3-167
               

               
Cow position:
               
chr9:31079125-31078962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
100, 22
               

               
Conread position:
               
3-167
               

               
Cow position:
               
chr9:34286754-34286923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
96, 70
               

               
Conread position:
               
3-180
               

               
Cow position:
               
chr9:6338748-6338930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
96, 65
               

               
Conread position:
               
3-180
               

               
Cow position:
               
chr9:9461702-9461521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
51, 40
               

               
Conread position:
               
3-180
               

               
Cow position:
               
chr9:11313555-11313377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
107, 65
               

               
Conread position:
               
3-180
               

               
Cow position:
               
chr9:26477171-26477350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
3-180
               

               
Cow position:
               
chr9:35105835-35105656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
107, 65
               

               
Conread position:
               
3-180
               

               
Cow position:
               
chr9:59386814-59386641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
3-180
               

               
Cow position:
               
chr9:64559927-64559750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
100, 48
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr9:1878047-1877852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 33
               

               
Conread position:
               
4-139
               

               
Cow position:
               
chr9:21383992-21383860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
4-144
               

               
Cow position:
               
chr9:25400242-25400099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
95, 30
               

               
Conread position:
               
4-154
               

               
Cow position:
               
chr9:54681465-54681614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
99, 64
               

               
Conread position:
               
4-158
               

               
Cow position:
               
chr9:55321593-55321753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
98, 64
               

               
Conread position:
               
4-162
               

               
Cow position:
               
chr9:18217143-18216983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
95, 63
               

               
Conread position:
               
4-163
               

               
Cow position:
               
chr9:5594459-5594616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
99, 64
               

               
Conread position:
               
4-164
               

               
Cow position:
               
chr9:8723750-8723911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
99, 51
               

               
Conread position:
               
4-164
               

               
Cow position:
               
chr9:17799581-17799747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
23, 70
               

               
Conread position:
               
4-164
               

               
Cow position:
               
chr9:33119932-33119768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
93, 69
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr9:1756189-1756026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
89, 64
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr9:1867407-1867568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
99, 67
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr9:1949873-1950038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr9:3186082-3186246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 64
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr9:6089045-6089210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
99, 14
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr9:8901271-8901105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
99, 63
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr9:11969142-11969306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
89, 64
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr9:20942660-20942491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
63, 88
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr9:21030264-21030427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
90, 64
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr9:21888126-21888285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
107, 56
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr9:25921779-25921946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
99, 65
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr9:27279265-27279427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
99, 64
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr9:37677850-37678003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr9:38846377-38846225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr9:43936901-43937058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr9:44467383-44467234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
101, 64
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr9:44834007-44833848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 68
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr9:45728735-45728897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
109, 64
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr9:48107160-48107000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
94, 62
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr9:49983133-49982981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr9:50081084-50080928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr9:55084345-55084179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
98, 17
               

               
Conread position:
               
4-166
               

               
Cow position:
               
chr9:11168686-11168849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
102, 64
               

               
Conread position:
               
4-166
               

               
Cow position:
               
chr9:22443671-22443508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
99, 64
               

               
Conread position:
               
4-166
               

               
Cow position:
               
chr9:33696988-33697148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
110, 14
               

               
Conread position:
               
5-159
               

               
Cow position:
               
chr9:45171266-45171106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
6-158
               

               
Cow position:
               
chr9:55889772-55889922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
101, 38
               

               
Conread position:
               
6-166
               

               
Cow position:
               
chr9:49764619-49764776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
93, 27
               

               
Conread position:
               
9-162
               

               
Cow position:
               
chr9:15225335-15225183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
94, 59
               

               
Conread position:
               
9-164
               

               
Cow position:
               
chr9:8288579-8288735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
93, 32
               

               
Conread position:
               
9-165
               

               
Cow position:
               
chr9:5209541-5209699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
96, 62
               

               
Conread position:
               
9-165
               

               
Cow position:
               
chr9:41789245-41789403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
80, 59
               

               
Conread position:
               
9-165
               

               
Cow position:
               
chr9:50202534-50202688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
89, 58
               

               
Conread position:
               
9-167
               

               
Cow position:
               
chr9:9823545-9823385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
91, 61
               

               
Conread position:
               
10-162
               

               
Cow position:
               
chr9:62656765-62656917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
22, 62
               

               
Conread position:
               
10-165
               

               
Cow position:
               
chr9:36445582-36445747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
92, 61
               

               
Conread position:
               
10-166
               

               
Cow position:
               
chr9:34902139-34901989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
102, 33
               

               
Conread position:
               
11-154
               

               
Cow position:
               
chr9:18828091-18827947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
88, 56
               

               
Conread position:
               
11-165
               

               
Cow position:
               
chr9:5900000-5899843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 52
               

               
Conread position:
               
11-165
               

               
Cow position:
               
chr9:9199819-9199661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
11-165
               

               
Cow position:
               
chr9:10010773-10010920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
11-165
               

               
Cow position:
               
chr9:11123520-11123364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
92, 14
               

               
Conread position:
               
11-165
               

               
Cow position:
               
chr9:15215724-15215567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
92, 57
               

               
Conread position:
               
11-165
               

               
Cow position:
               
chr9:29185174-29185014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
88, 60
               

               
Conread position:
               
11-165
               

               
Cow position:
               
chr9:35849867-35850018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
91, 56
               

               
Conread position:
               
11-165
               

               
Cow position:
               
chr9:52407127-52407285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
98, 57
               

               
Conread position:
               
11-166
               

               
Cow position:
               
chr9:35375389-35375547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
90, 17
               

               
Conread position:
               
12-165
               

               
Cow position:
               
chr9:43013686-43013842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
87, 27
               

               
Conread position:
               
12-175
               

               
Cow position:
               
chr9:25583794-25583958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
87, 50
               

               
Conread position:
               
13-168
               

               
Cow position:
               
chr9:4861349-4861509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
86, 58
               

               
Conread position:
               
15-165
               

               
Cow position:
               
chr9:5433599-5433756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
88, 58
               

               
Conread position:
               
17-165
               

               
Cow position:
               
chr9:24997550-24997401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
96, 51
               

               
Conread position:
               
18-165
               

               
Cow position:
               
chr9:38343860-38344009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
26-165
               

               
Cow position:
               
chr9:3387667-3387809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
77, 42
               

               
Conread position:
               
26-165
               

               
Cow position:
               
chr9:42497799-42497944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
77, 61
               

               
Conread position:
               
28-165
               

               
Cow position:
               
chr9:1952290-1952150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
78, 43
               

               
Conread position:
               
36-180
               

               
Cow position:
               
chr9:41513612-41513757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
67, 35
               

               
Conread position:
               
37-158
               

               
Cow position:
               
chr9:33038472-33038349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 28
               

               
Conread position:
               
37-165
               

               
Cow position:
               
chr9:6225466-6225335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
54, 31
               

               
Conread position:
               
38-167
               

               
Cow position:
               
chr9:44417445-44417318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
20, 35
               

               
Conread position:
               
44-159
               

               
Cow position:
               
chr9:32710925-32711041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
59, 22
               

               
Conread position:
               
44-165
               

               
Cow position:
               
chr9:31270775-31270898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 25
               

               
Conread position:
               
47-165
               

               
Cow position:
               
chr9:8524841-8524955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
88, 26
               

               
Conread position:
               
67-165
               

               
Cow position:
               
chr9:34000602-34000505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 75
               
Show alignments to all cow chromosomes.