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Cow genome map

           
Conread name:
           
Tra1-TCH01C100080
        

               
Conread position:
               
1-148
               

               
Cow position:
               
chrX:6260046-6260194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
98, 59
               

               
Conread position:
               
1-158
               

               
Cow position:
               
chrX:22624579-22624417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
102, 70
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chrX:11084961-11085119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chrX:11633785-11633617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
102, 67
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chrX:11856533-11856366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
96, 65
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chrX:15815186-15815024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
94, 5
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chrX:25815798-25815969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
98, 66
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chrX:31515277-31515106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
47, 71
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chrX:32420315-32420157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chrX:36514789-36514957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
33, 71
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chrX:39558246-39558413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
102, 17
               

               
Conread position:
               
1-166
               

               
Cow position:
               
chrX:37119696-37119530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
102, 64
               

               
Conread position:
               
1-166
               

               
Cow position:
               
chrX:48044412-48044577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
102, 39
               

               
Conread position:
               
2-165
               

               
Cow position:
               
chrX:6265497-6265662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
91, 38
               

               
Conread position:
               
3-138
               

               
Cow position:
               
chrX:23188683-23188813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
3-147
               

               
Cow position:
               
chrX:4645812-4645957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
95, 64
               

               
Conread position:
               
3-151
               

               
Cow position:
               
chrX:19943135-19943286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
26, 42
               

               
Conread position:
               
3-157
               

               
Cow position:
               
chrX:6541632-6541791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
3-157
               

               
Cow position:
               
chrX:37489820-37489671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
3-158
               

               
Cow position:
               
chrX:878279-878439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
99, 70
               

               
Conread position:
               
3-158
               

               
Cow position:
               
chrX:4043766-4043916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
3-158
               

               
Cow position:
               
chrX:7722089-7721933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
96, 31
               

               
Conread position:
               
3-158
               

               
Cow position:
               
chrX:26625570-26625732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
110, 65
               

               
Conread position:
               
3-158
               

               
Cow position:
               
chrX:32977984-32978133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
3-159
               

               
Cow position:
               
chrX:169445-169602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
98, 53
               

               
Conread position:
               
3-160
               

               
Cow position:
               
chrX:8869301-8869462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
94, 70
               

               
Conread position:
               
3-161
               

               
Cow position:
               
chrX:15007048-15007208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
101, 65
               

               
Conread position:
               
3-162
               

               
Cow position:
               
chrX:7278012-7277851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
99, 64
               

               
Conread position:
               
3-162
               

               
Cow position:
               
chrX:25788804-25788956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
125, 63
               

               
Conread position:
               
3-162
               

               
Cow position:
               
chrX:27511529-27511367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
3-162
               

               
Cow position:
               
chrX:42492422-42492578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
155, 65
               

               
Conread position:
               
3-162
               

               
Cow position:
               
chrX:46429718-46429881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
100, 66
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chrX:12095671-12095834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chrX:21328014-21327845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 70
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chrX:42235423-42235589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
104, 68
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chrX:45993331-45993162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chrX:46587923-46587759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
106, 65
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chrX:47165785-47165945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
88, 64
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chrX:47186223-47186380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
99, 68
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chrX:4109285-4109128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
105, 65
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chrX:4152930-4153097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
98, 70
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chrX:5900563-5900407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chrX:6690159-6690318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
102, 64
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chrX:9201649-9201488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
108, 72
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chrX:9252062-9252224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
105, 68
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chrX:20584429-20584262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
100, 66
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chrX:21642381-21642540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:917267-917428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
96, 68
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:927484-927646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:1499766-1499604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
100, 62
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:1615942-1616107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
88, 48
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:3580045-3579883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
100, 64
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:4296724-4296882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
90, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:4515791-4515621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
31, 12
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:5872418-5872258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
100, 68
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:7351398-7351238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
96, 41
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:7572006-7571840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
100, 70
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:8797350-8797190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
100, 50
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:8925800-8925638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
102, 68
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:9635090-9635248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
30, 37
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:10394008-10394162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:11614794-11614637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
100, 28
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:11656182-11656029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:12309285-12309448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:13382425-13382267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
100, 34
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:14955668-14955827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
96, 63
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:15147096-15147250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:17888322-17888481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:18204362-18204524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
33, 69
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:18694830-18694987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
99, 31
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:22387149-22387305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:22822147-22821988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:23513916-23514078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
100, 40
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:23563690-23563853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
90, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:24331877-24331716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
103, 64
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:27228227-27228065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
107, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:27393925-27394083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
113, 63
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:27945953-27946119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
90, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:28878073-28878232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
120, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:29121148-29120983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
98, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:29289679-29289516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
107, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:29601727-29601893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
99, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:29680160-29680323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
101, 68
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:31312130-31311966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
99, 66
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:33001006-33000840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
91, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:33204868-33205027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:36866274-36866108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
100, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:37781008-37781174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
100, 70
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:37910546-37910383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
96, 70
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:38218815-38218647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
100, 64
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:38728835-38728675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
106, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:38964209-38964042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
100, 68
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:40269593-40269425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
31, 69
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:41027260-41027093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
106, 68
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:41068826-41068658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
99, 68
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:42171195-42171359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
100, 8
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:42247081-42247249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
96, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:42855559-42855392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
113, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:43779746-43779909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
100, 68
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:44397110-44396955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:45403724-45403890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
79, 65
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:47481897-47481739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
98, 40
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:48236918-48236756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chrX:14973645-14973804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
99, 55
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chrX:17662497-17662657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
96, 44
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chrX:34565385-34565217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
96, 22
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chrX:38094419-38094585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
94, 40
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chrX:40680715-40680547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
100, 65
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chrX:41111817-41111657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
99, 27
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chrX:41238254-41238417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chrX:44054903-44054743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
3-167
               

               
Cow position:
               
chrX:6278397-6278565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
99, 65
               

               
Conread position:
               
3-169
               

               
Cow position:
               
chrX:27261293-27261122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 66
               

               
Conread position:
               
3-174
               

               
Cow position:
               
chrX:23561959-23561790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
29, 69
               

               
Conread position:
               
3-174
               

               
Cow position:
               
chrX:27680499-27680321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
101, 65
               

               
Conread position:
               
3-175
               

               
Cow position:
               
chrX:33640076-33639899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
96, 65
               

               
Conread position:
               
3-177
               

               
Cow position:
               
chrX:11317867-11318043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 32
               

               
Conread position:
               
3-180
               

               
Cow position:
               
chrX:28134439-28134266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
147, 15
               

               
Conread position:
               
3-184
               

               
Cow position:
               
chrX:7648309-7648483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
3-199
               

               
Cow position:
               
chrX:16575213-16575024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
165, 65
               

               
Conread position:
               
4-137
               

               
Cow position:
               
chrX:17956790-17956660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
99, 25
               

               
Conread position:
               
4-144
               

               
Cow position:
               
chrX:11082522-11082666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
99, 62
               

               
Conread position:
               
4-144
               

               
Cow position:
               
chrX:29553385-29553243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
95, 63
               

               
Conread position:
               
4-158
               

               
Cow position:
               
chrX:29544777-29544931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
108, 63
               

               
Conread position:
               
4-163
               

               
Cow position:
               
chrX:38936800-38936636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
53, 58
               

               
Conread position:
               
4-164
               

               
Cow position:
               
chrX:10411886-10412048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
108, 64
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chrX:161512-161350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
99, 67
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chrX:4268964-4269124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 62
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chrX:7710439-7710601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
97, 71
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chrX:11073091-11073255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
95, 65
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chrX:11717683-11717851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
99, 69
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chrX:27705686-27705524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
95, 64
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chrX:29194329-29194171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
98, 33
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chrX:34503020-34502859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
106, 67
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chrX:38208445-38208606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
94, 61
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chrX:39220179-39220017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
98, 63
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chrX:48003946-48003784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
87, 63
               

               
Conread position:
               
4-166
               

               
Cow position:
               
chrX:8917494-8917333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
4-166
               

               
Cow position:
               
chrX:27685349-27685184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
23, 65
               

               
Conread position:
               
4-166
               

               
Cow position:
               
chrX:30543184-30543352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
98, 64
               

               
Conread position:
               
4-166
               

               
Cow position:
               
chrX:31294472-31294627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
4-166
               

               
Cow position:
               
chrX:38549547-38549383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
70, 59
               

               
Conread position:
               
4-167
               

               
Cow position:
               
chrX:32623671-32623502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
99, 67
               

               
Conread position:
               
4-170
               

               
Cow position:
               
chrX:21566507-21566336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
99, 67
               

               
Conread position:
               
4-170
               

               
Cow position:
               
chrX:46072717-46072887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
97, 69
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chrX:20801869-20801696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
165, 65
               

               
Conread position:
               
6-165
               

               
Cow position:
               
chrX:26440687-26440841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
8-174
               

               
Cow position:
               
chrX:39126422-39126258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
103, 63
               

               
Conread position:
               
9-152
               

               
Cow position:
               
chrX:29115800-29115661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
9-152
               

               
Cow position:
               
chrX:42498953-42499099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
94, 28
               

               
Conread position:
               
9-160
               

               
Cow position:
               
chrX:22914945-22915094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
9-163
               

               
Cow position:
               
chrX:7646346-7646195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
100, 62
               

               
Conread position:
               
9-164
               

               
Cow position:
               
chrX:616164-616324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
88, 70
               

               
Conread position:
               
9-165
               

               
Cow position:
               
chrX:6488671-6488514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
94, 35
               

               
Conread position:
               
9-165
               

               
Cow position:
               
chrX:10959300-10959460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
98, 62
               

               
Conread position:
               
9-165
               

               
Cow position:
               
chrX:16348476-16348631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
93, 35
               

               
Conread position:
               
9-165
               

               
Cow position:
               
chrX:34402095-34401935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
103, 59
               

               
Conread position:
               
9-165
               

               
Cow position:
               
chrX:36356201-36356052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
94, 22
               

               
Conread position:
               
9-165
               

               
Cow position:
               
chrX:43527603-43527447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
104, 56
               

               
Conread position:
               
9-165
               

               
Cow position:
               
chrX:45113714-45113556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
9-168
               

               
Cow position:
               
chrX:43426390-43426225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 62
               

               
Conread position:
               
9-175
               

               
Cow position:
               
chrX:17630706-17630879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 64
               

               
Conread position:
               
9-180
               

               
Cow position:
               
chrX:43730129-43730297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
94, 60
               

               
Conread position:
               
10-165
               

               
Cow position:
               
chrX:23562726-23562572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
93, 57
               

               
Conread position:
               
10-165
               

               
Cow position:
               
chrX:24365727-24365888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
93, 58
               

               
Conread position:
               
10-165
               

               
Cow position:
               
chrX:34222810-34222651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
89, 58
               

               
Conread position:
               
10-165
               

               
Cow position:
               
chrX:43568013-43567859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
10-168
               

               
Cow position:
               
chrX:39415276-39415432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
97, 61
               

               
Conread position:
               
10-170
               

               
Cow position:
               
chrX:25440904-25441062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
10-186
               

               
Cow position:
               
chrX:42873476-42873308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
155, 34
               

               
Conread position:
               
11-158
               

               
Cow position:
               
chrX:12290812-12290666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
11-164
               

               
Cow position:
               
chrX:26493099-26492945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
76, 56
               

               
Conread position:
               
11-165
               

               
Cow position:
               
chrX:10831394-10831556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
28, 60
               

               
Conread position:
               
11-165
               

               
Cow position:
               
chrX:21593374-21593225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
92, 23
               

               
Conread position:
               
11-165
               

               
Cow position:
               
chrX:25037080-25036924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
90, 57
               

               
Conread position:
               
11-165
               

               
Cow position:
               
chrX:40480779-40480931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
104, 23
               

               
Conread position:
               
11-165
               

               
Cow position:
               
chrX:45875485-45875330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
92, 57
               

               
Conread position:
               
11-165
               

               
Cow position:
               
chrX:46433584-46433428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
91, 56
               

               
Conread position:
               
11-166
               

               
Cow position:
               
chrX:21004777-21004618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
92, 56
               

               
Conread position:
               
11-166
               

               
Cow position:
               
chrX:32821121-32820966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
92, 47
               

               
Conread position:
               
11-173
               

               
Cow position:
               
chrX:4279025-4279187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
93, 57
               

               
Conread position:
               
11-183
               

               
Cow position:
               
chrX:13147074-13146900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
83, 64
               

               
Conread position:
               
12-160
               

               
Cow position:
               
chrX:1360181-1360028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
12-166
               

               
Cow position:
               
chrX:20168650-20168494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
95, 56
               

               
Conread position:
               
13-158
               

               
Cow position:
               
chrX:10516344-10516194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
89, 55
               

               
Conread position:
               
13-164
               

               
Cow position:
               
chrX:30133227-30133382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
84, 54
               

               
Conread position:
               
13-164
               

               
Cow position:
               
chrX:48201384-48201234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 17
               

               
Conread position:
               
13-165
               

               
Cow position:
               
chrX:9365585-9365738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
90, 55
               

               
Conread position:
               
13-169
               

               
Cow position:
               
chrX:40692660-40692820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
91, 58
               

               
Conread position:
               
13-172
               

               
Cow position:
               
chrX:15820685-15820528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
100, 18
               

               
Conread position:
               
14-165
               

               
Cow position:
               
chrX:12405291-12405446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
85, 53
               

               
Conread position:
               
15-163
               

               
Cow position:
               
chrX:1572050-1572198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
84, 52
               

               
Conread position:
               
15-165
               

               
Cow position:
               
chrX:43973634-43973481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
92, 53
               

               
Conread position:
               
17-158
               

               
Cow position:
               
chrX:17542047-17541902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
84, 57
               

               
Conread position:
               
17-165
               

               
Cow position:
               
chrX:48385276-48385420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
19-158
               

               
Cow position:
               
chrX:42507563-42507699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
19-165
               

               
Cow position:
               
chrX:5638084-5638231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
90, 52
               

               
Conread position:
               
21-165
               

               
Cow position:
               
chrX:16416592-16416445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
81, 47
               

               
Conread position:
               
28-165
               

               
Cow position:
               
chrX:11589512-11589650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
75, 40
               

               
Conread position:
               
34-166
               

               
Cow position:
               
chrX:39938453-39938587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
80, 37
               

               
Conread position:
               
37-154
               

               
Cow position:
               
chrX:14900666-14900781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
62, 28
               

               
Conread position:
               
37-164
               

               
Cow position:
               
chrX:44703007-44703134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
63, 31
               

               
Conread position:
               
37-166
               

               
Cow position:
               
chrX:6234382-6234516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
38-163
               

               
Cow position:
               
chrX:20790979-20790860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
38-164
               

               
Cow position:
               
chrX:38654364-38654494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 33
               

               
Conread position:
               
39-165
               

               
Cow position:
               
chrX:19188996-19188875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
40-166
               

               
Cow position:
               
chrX:17301242-17301373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
53, 28
               

               
Conread position:
               
41-165
               

               
Cow position:
               
chrX:7718912-7718793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
41-166
               

               
Cow position:
               
chrX:19003360-19003236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
42-166
               

               
Cow position:
               
chrX:42994675-42994549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
61, 26
               

               
Conread position:
               
43-165
               

               
Cow position:
               
chrX:41166901-41167027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
60, 25
               

               
Conread position:
               
44-165
               

               
Cow position:
               
chrX:36961701-36961580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
65, 27
               

               
Conread position:
               
49-165
               

               
Cow position:
               
chrX:28845888-28845768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
62, 19
               

               
Conread position:
               
52-165
               

               
Cow position:
               
chrX:42461692-42461807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
51, 16
               

               
Conread position:
               
52-166
               

               
Cow position:
               
chrX:42875035-42874920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 16
               

               
Conread position:
               
61-166
               

               
Cow position:
               
chrX:40648029-40647922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
46, 7
               

               
Conread position:
               
66-165
               

               
Cow position:
               
chrX:25282974-25283077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
73-166
               

               
Cow position:
               
chrX:37048549-37048641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               
Show alignments to all cow chromosomes.