Cow genome map
| Conread name: | Tra1-TCH01D020044 |
| Conread position: | 312-521 |
| Cow position: | chr1:59801917-59802130 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 110, 13 |
| Conread position: | 312-576 |
| Cow position: | chr1:5214540-5214809 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 111, 13 |
| Conread position: | 313-511 |
| Cow position: | chr1:16402438-16402238 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 109, 12 |
| Conread position: | 316-591 |
| Cow position: | chr1:70398218-70398496 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 105, 165 |
| Conread position: | 316-682 |
| Cow position: | chr1:76918510-76918878 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 259 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 107, 24 |
| Conread position: | 316-713 |
| Cow position: | chr1:37247160-37247541 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 267 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 106, 22 |
| Conread position: | 317-449 |
| Cow position: | chr1:65557286-65557415 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 321-643 |
| Cow position: | chr1:14199319-14199652 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 26 |
| Conread position: | 322-708 |
| Cow position: | chr1:52383680-52383289 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 28 |
| Conread position: | 325-449 |
| Cow position: | chr1:69285822-69285950 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 56 |
| Conread position: | 325-613 |
| Cow position: | chr1:49350557-49350849 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 97, 186 |
| Conread position: | 325-621 |
| Cow position: | chr1:66556606-66556299 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 325-707 |
| Cow position: | chr1:9677572-9677181 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 267 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 34, 177 |
| Conread position: | 325-710 |
| Cow position: | chr1:15818059-15817662 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 113 |
| Conread position: | 325-722 |
| Cow position: | chr1:3011556-3011168 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 163, 43 |
| Conread position: | 326-592 |
| Cow position: | chr1:15820138-15819876 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 40, 134 |
| Conread position: | 327-712 |
| Cow position: | chr1:89001289-89000899 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 338-692 |
| Cow position: | chr1:5237102-5236767 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 150, 41 |
| Conread position: | 340-702 |
| Cow position: | chr1:59913371-59913007 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 74 |
| Conread position: | 348-576 |
| Cow position: | chr1:9155968-9155751 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 73, 105 |
| Conread position: | 362-547 |
| Cow position: | chr1:42910023-42909834 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 93 |
| Conread position: | 381-662 |
| Cow position: | chr1:31116815-31116523 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 42, 145 |
| Conread position: | 392-713 |
| Cow position: | chr1:25749178-25749505 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 188, 114 |
| Conread position: | 473-688 |
| Cow position: | chr1:32783397-32783618 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 185 |
| Conread position: | 474-711 |
| Cow position: | chr1:26019661-26019422 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 14, 72 |
| Conread position: | 475-671 |
| Cow position: | chr1:69286125-69286322 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 13, 150 |
| Conread position: | 498-632 |
| Cow position: | chr1:16195362-16195496 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 500-688 |
| Cow position: | chr1:4625269-4625458 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 123, 133 |
Show alignments to all cow chromosomes.