Cow genome map
| Conread name: | Tra1-TCH01D020098 |
| Conread position: | 460-690 |
| Cow position: | chr1:93223320-93223096 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 92, 36 |
| Conread position: | 462-676 |
| Cow position: | chr1:61739627-61739418 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 88, 48 |
| Conread position: | 462-783 |
| Cow position: | chr1:44138673-44138355 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 74 |
| Conread position: | 462-788 |
| Cow position: | chr1:88296822-88297126 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 91, 62 |
| Conread position: | 462-788 |
| Cow position: | chr1:99021822-99021498 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 38 |
| Conread position: | 462-789 |
| Cow position: | chr1:16581855-16581528 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 90, 61 |
| Conread position: | 462-794 |
| Cow position: | chr1:59643785-59644107 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 230 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 462-794 |
| Cow position: | chr1:69063526-69063199 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 66 |
| Conread position: | 463-789 |
| Cow position: | chr1:57653222-57653545 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 89, 64 |
| Conread position: | 464-789 |
| Cow position: | chr1:19993540-19993223 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 16 |
| Conread position: | 464-790 |
| Cow position: | chr1:73008976-73009299 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 88, 72 |
| Conread position: | 465-767 |
| Cow position: | chr1:56630639-56630943 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 62 |
| Conread position: | 465-794 |
| Cow position: | chr1:29951425-29951104 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 227 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 87, 11 |
| Conread position: | 465-794 |
| Cow position: | chr1:31423062-31422738 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 71 |
| Conread position: | 467-789 |
| Cow position: | chr1:99373943-99374263 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 46 |
| Conread position: | 474-794 |
| Cow position: | chr1:29904923-29904605 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 17 |
| Conread position: | 503-752 |
| Cow position: | chr1:21357401-21357152 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 544-793 |
| Cow position: | chr1:46834610-46834859 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 190, 15 |
| Conread position: | 545-793 |
| Cow position: | chr1:76044668-76044421 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 550-789 |
| Cow position: | chr1:63500673-63500911 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 551-761 |
| Cow position: | chr1:32342816-32342607 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 58 |
| Conread position: | 553-751 |
| Cow position: | chr1:7145739-7145547 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 44 |
| Conread position: | 554-788 |
| Cow position: | chr1:93415867-93416095 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 557-794 |
| Cow position: | chr1:30057773-30058011 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 179, 157 |
| Conread position: | 571-794 |
| Cow position: | chr1:33387531-33387763 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 625-789 |
| Cow position: | chr1:15024068-15024230 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 633-789 |
| Cow position: | chr1:18014893-18014736 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 641-794 |
| Cow position: | chr1:82353742-82353897 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 54, 153 |
| Conread position: | 669-790 |
| Cow position: | chr1:80556806-80556687 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 690-789 |
| Cow position: | chr1:39482823-39482723 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 5, 0 |
Show alignments to all cow chromosomes.