Cow genome map
| Conread name: | Tra1-TCH01D090010 |
| Conread position: | 1-136 |
| Cow position: | chr10:25142357-25142492 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 1-157 |
| Cow position: | chr10:40999038-40998880 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 1-210 |
| Cow position: | chr10:33215973-33215753 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 121, 59 |
| Conread position: | 1-216 |
| Cow position: | chr10:17150051-17149823 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 62, 9 |
| Conread position: | 3-122 |
| Cow position: | chr10:46327869-46327750 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-127 |
| Cow position: | chr10:18751298-18751421 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-130 |
| Cow position: | chr10:23346129-23346252 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-130 |
| Cow position: | chr10:34654933-34655057 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 3-131 |
| Cow position: | chr10:5599820-5599953 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 3-131 |
| Cow position: | chr10:24756587-24756462 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 3-131 |
| Cow position: | chr10:37375567-37375698 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 74, 11 |
| Conread position: | 3-131 |
| Cow position: | chr10:39124314-39124183 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 3-131 |
| Cow position: | chr10:49029828-49029702 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 10, 85 |
| Conread position: | 3-131 |
| Cow position: | chr10:61509769-61509893 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-137 |
| Cow position: | chr10:9575870-9576004 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-137 |
| Cow position: | chr10:49862641-49862511 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-163 |
| Cow position: | chr10:33694546-33694392 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 130, 11 |
| Conread position: | 3-206 |
| Cow position: | chr10:51863147-51863356 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 108, 38 |
| Conread position: | 3-210 |
| Cow position: | chr10:25260407-25260205 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 107, 11 |
| Conread position: | 3-212 |
| Cow position: | chr10:17553341-17553131 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 43 |
| Conread position: | 3-212 |
| Cow position: | chr10:38376496-38376711 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 98, 68 |
| Conread position: | 3-213 |
| Cow position: | chr10:23341072-23340852 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 3-215 |
| Cow position: | chr10:30216538-30216760 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 104, 208 |
| Conread position: | 3-217 |
| Cow position: | chr10:28721957-28721727 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 3-224 |
| Cow position: | chr10:35731350-35731588 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 121, 11 |
| Conread position: | 4-122 |
| Cow position: | chr10:16641753-16641870 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 4-195 |
| Cow position: | chr10:35820161-35820347 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 64, 15 |
| Conread position: | 4-217 |
| Cow position: | chr10:48573521-48573738 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 15 |
| Conread position: | 5-122 |
| Cow position: | chr10:1978496-1978612 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 5-122 |
| Cow position: | chr10:31534915-31534795 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 5-137 |
| Cow position: | chr10:22390773-22390641 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 15, 9 |
| Conread position: | 5-198 |
| Cow position: | chr10:6174129-6174330 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 85, 20 |
| Conread position: | 5-212 |
| Cow position: | chr10:60697453-60697676 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 131, 9 |
| Conread position: | 5-217 |
| Cow position: | chr10:53903412-53903615 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 6-223 |
| Cow position: | chr10:48178515-48178293 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 87, 42 |
| Conread position: | 7-137 |
| Cow position: | chr10:54848952-54848822 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-217 |
| Cow position: | chr10:24421998-24422215 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 9-131 |
| Cow position: | chr10:37507979-37508099 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 11-131 |
| Cow position: | chr10:52695556-52695676 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-212 |
| Cow position: | chr10:37668008-37668208 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 75, 60 |
| Conread position: | 12-121 |
| Cow position: | chr10:2857217-2857107 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 12-160 |
| Cow position: | chr10:47712658-47712510 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 89, 50 |
| Conread position: | 12-196 |
| Cow position: | chr10:30224841-30224650 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 153 |
| Conread position: | 12-210 |
| Cow position: | chr10:59572062-59571852 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 64, 188 |
| Conread position: | 12-218 |
| Cow position: | chr10:14947423-14947203 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 121, 93 |
| Conread position: | 12-223 |
| Cow position: | chr10:58451211-58451434 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 72, 23 |
| Conread position: | 12-224 |
| Cow position: | chr10:28152226-28152443 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 74, 27 |
| Conread position: | 13-218 |
| Cow position: | chr10:25822085-25822303 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 13-242 |
| Cow position: | chr10:19191922-19191678 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 119, 242 |
| Conread position: | 18-223 |
| Cow position: | chr10:13390902-13391111 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 74, 50 |
| Conread position: | 19-223 |
| Cow position: | chr10:17583893-17584100 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 58, 14 |
| Conread position: | 20-217 |
| Cow position: | chr10:22527758-22527959 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 91, 65 |
| Conread position: | 20-244 |
| Cow position: | chr10:28905032-28905264 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 104, 135 |
| Conread position: | 21-241 |
| Cow position: | chr10:22633488-22633708 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 102, 38 |
| Conread position: | 23-223 |
| Cow position: | chr10:29379812-29380021 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 77, 131 |
| Conread position: | 36-218 |
| Cow position: | chr10:53674962-53674767 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 127-213 |
| Cow position: | chr10:37768337-37768251 (view UCSC Genome Browser custom track) |
| Alignm length: | 87 |
| Alignm identity: | 79 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 127-214 |
| Cow position: | chr10:39228180-39228093 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.