Cow genome map
| Conread name: | Tra1-TCH01D090010 |
| Conread position: | 1-131 |
| Cow position: | chr13:25817310-25817438 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-193 |
| Cow position: | chr13:21902186-21902387 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 85, 14 |
| Conread position: | 2-216 |
| Cow position: | chr13:8374982-8374755 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 13, 148 |
| Conread position: | 3-122 |
| Cow position: | chr13:52477861-52477744 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-130 |
| Cow position: | chr13:19393079-19393202 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 3-131 |
| Cow position: | chr13:13320580-13320708 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-131 |
| Cow position: | chr13:14063737-14063610 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 92, 11 |
| Conread position: | 3-131 |
| Cow position: | chr13:17815027-17815149 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 3-137 |
| Cow position: | chr13:6189816-6189683 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-138 |
| Cow position: | chr13:42200404-42200537 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-196 |
| Cow position: | chr13:15144048-15143845 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 81, 163 |
| Conread position: | 3-212 |
| Cow position: | chr13:15069755-15069971 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 92, 154 |
| Conread position: | 3-212 |
| Cow position: | chr13:17745042-17745257 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 57, 11 |
| Conread position: | 3-214 |
| Cow position: | chr13:17821475-17821254 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 3-216 |
| Cow position: | chr13:56535250-56535473 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 94, 149 |
| Conread position: | 3-222 |
| Cow position: | chr13:6540517-6540285 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 98, 11 |
| Conread position: | 3-222 |
| Cow position: | chr13:15233729-15233950 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 79, 54 |
| Conread position: | 3-230 |
| Cow position: | chr13:33974529-33974763 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 94, 214 |
| Conread position: | 4-131 |
| Cow position: | chr13:41474660-41474783 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 4-212 |
| Cow position: | chr13:4037707-4037907 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 4-216 |
| Cow position: | chr13:7149022-7149244 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 106, 10 |
| Conread position: | 4-217 |
| Cow position: | chr13:45439317-45439541 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 122, 10 |
| Conread position: | 5-122 |
| Cow position: | chr13:21288299-21288183 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 5-127 |
| Cow position: | chr13:20288122-20288245 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 5-196 |
| Cow position: | chr13:8779041-8779240 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 89, 83 |
| Conread position: | 5-216 |
| Cow position: | chr13:22085946-22085728 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 92, 14 |
| Conread position: | 5-217 |
| Cow position: | chr13:15194936-15194715 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 95, 82 |
| Conread position: | 6-127 |
| Cow position: | chr13:30809588-30809466 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 85, 13 |
| Conread position: | 7-211 |
| Cow position: | chr13:15289132-15288912 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 130, 80 |
| Conread position: | 11-131 |
| Cow position: | chr13:23399557-23399677 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-122 |
| Cow position: | chr13:23823238-23823130 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 12-127 |
| Cow position: | chr13:35557319-35557204 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-131 |
| Cow position: | chr13:20821045-20820926 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-193 |
| Cow position: | chr13:58388499-58388670 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 12-213 |
| Cow position: | chr13:21242284-21242069 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 12-217 |
| Cow position: | chr13:18181959-18181756 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 62, 55 |
| Conread position: | 18-214 |
| Cow position: | chr13:20090569-20090363 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 115, 86 |
| Conread position: | 20-127 |
| Cow position: | chr13:14644853-14644958 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 44-214 |
| Cow position: | chr13:29662861-29663043 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 160 |
| Conread position: | 127-214 |
| Cow position: | chr13:55316262-55316175 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 127-219 |
| Cow position: | chr13:18696769-18696861 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 80 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.