Cow genome map
| Conread name: | Tra1-TCH01D090010 |
| Conread position: | 1-127 |
| Cow position: | chr16:48613272-48613398 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-217 |
| Cow position: | chr16:280483-280715 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 2-131 |
| Cow position: | chr16:31149580-31149452 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 3-117 |
| Cow position: | chr16:30036439-30036328 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 95, 42 |
| Conread position: | 3-127 |
| Cow position: | chr16:42078645-42078769 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 90, 11 |
| Conread position: | 3-127 |
| Cow position: | chr16:48957002-48956877 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 11 |
| Conread position: | 3-130 |
| Cow position: | chr16:31011532-31011403 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 3-131 |
| Cow position: | chr16:7723902-7723776 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-131 |
| Cow position: | chr16:31561958-31561830 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-137 |
| Cow position: | chr16:14376985-14376848 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 3-213 |
| Cow position: | chr16:52790234-52790026 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-216 |
| Cow position: | chr16:55233881-55233652 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 137, 11 |
| Conread position: | 3-217 |
| Cow position: | chr16:19815067-19815280 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 61, 40 |
| Conread position: | 3-217 |
| Cow position: | chr16:25839814-25839587 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 72, 16 |
| Conread position: | 3-217 |
| Cow position: | chr16:29636042-29636263 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 54, 11 |
| Conread position: | 3-217 |
| Cow position: | chr16:42778149-42777931 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 128, 86 |
| Conread position: | 3-217 |
| Cow position: | chr16:52834698-52834921 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 97, 11 |
| Conread position: | 3-217 |
| Cow position: | chr16:56232015-56231794 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 94, 11 |
| Conread position: | 3-218 |
| Cow position: | chr16:37401442-37401217 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 94, 11 |
| Conread position: | 3-218 |
| Cow position: | chr16:40514289-40514516 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 3-223 |
| Cow position: | chr16:23681565-23681328 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 3-231 |
| Cow position: | chr16:29655517-29655277 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 68, 11 |
| Conread position: | 4-131 |
| Cow position: | chr16:49733942-49734071 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 4-212 |
| Cow position: | chr16:53408745-53408958 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 98, 10 |
| Conread position: | 5-122 |
| Cow position: | chr16:13306670-13306788 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 84, 9 |
| Conread position: | 5-138 |
| Cow position: | chr16:46433123-46433257 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 5-198 |
| Cow position: | chr16:27281707-27281896 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 100, 14 |
| Conread position: | 5-213 |
| Cow position: | chr16:36120794-36121012 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 5-219 |
| Cow position: | chr16:8530697-8530918 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 82, 9 |
| Conread position: | 6-122 |
| Cow position: | chr16:41696206-41696092 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 9-216 |
| Cow position: | chr16:50872991-50873202 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 55, 43 |
| Conread position: | 12-122 |
| Cow position: | chr16:3938817-3938927 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-131 |
| Cow position: | chr16:12324649-12324530 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-214 |
| Cow position: | chr16:12085614-12085825 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 12-217 |
| Cow position: | chr16:45731210-45731420 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 74, 22 |
| Conread position: | 12-223 |
| Cow position: | chr16:54226419-54226636 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 29, 146 |
| Conread position: | 13-214 |
| Cow position: | chr16:32893813-32893598 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 75, 57 |
| Conread position: | 19-127 |
| Cow position: | chr16:56627119-56627013 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 36 |
| Conread position: | 19-131 |
| Cow position: | chr16:33704990-33704880 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 79, 54 |
| Conread position: | 19-131 |
| Cow position: | chr16:41653160-41653048 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-214 |
| Cow position: | chr16:23034017-23033821 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 54, 123 |
| Conread position: | 19-218 |
| Cow position: | chr16:14125309-14125111 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 81, 68 |
| Conread position: | 20-122 |
| Cow position: | chr16:12236119-12236221 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-217 |
| Cow position: | chr16:10505001-10504795 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 57, 18 |
| Conread position: | 23-217 |
| Cow position: | chr16:16571084-16570880 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 67, 130 |
| Conread position: | 37-217 |
| Cow position: | chr16:31078930-31079123 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 187 |
| Conread position: | 37-241 |
| Cow position: | chr16:25484492-25484284 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 79, 53 |
| Conread position: | 122-213 |
| Cow position: | chr16:33226477-33226567 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 81 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
Show alignments to all cow chromosomes.