Cow genome map
| Conread name: | Tra1-TCH01D090010 |
| Conread position: | 1-216 |
| Cow position: | chr25:22298834-22298602 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 122, 13 |
| Conread position: | 1-217 |
| Cow position: | chr25:21192740-21192965 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 125, 10 |
| Conread position: | 3-122 |
| Cow position: | chr25:17141304-17141183 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 3-131 |
| Cow position: | chr25:1840522-1840396 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 3-131 |
| Cow position: | chr25:3992981-3992851 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 3-131 |
| Cow position: | chr25:7864531-7864405 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-131 |
| Cow position: | chr25:15349709-15349836 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 3-131 |
| Cow position: | chr25:20203107-20202985 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-131 |
| Cow position: | chr25:24669252-24669377 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-137 |
| Cow position: | chr25:22315404-22315271 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-137 |
| Cow position: | chr25:33550712-33550577 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 96, 77 |
| Conread position: | 3-212 |
| Cow position: | chr25:10156754-10156541 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 110, 31 |
| Conread position: | 3-213 |
| Cow position: | chr25:4245866-4245645 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 123, 87 |
| Conread position: | 3-214 |
| Cow position: | chr25:33557467-33557243 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 94, 161 |
| Conread position: | 3-216 |
| Cow position: | chr25:7441209-7440994 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 88, 16 |
| Conread position: | 3-217 |
| Cow position: | chr25:2414997-2414779 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 96, 11 |
| Conread position: | 3-224 |
| Cow position: | chr25:4681405-4681190 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 80, 11 |
| Conread position: | 4-131 |
| Cow position: | chr25:22734206-22734079 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 60, 53 |
| Conread position: | 4-209 |
| Cow position: | chr25:12509821-12510039 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 5-146 |
| Cow position: | chr25:36746249-36746393 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 5-210 |
| Cow position: | chr25:37255057-37254856 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 9 |
| Conread position: | 5-216 |
| Cow position: | chr25:25753827-25754033 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 178, 14 |
| Conread position: | 6-131 |
| Cow position: | chr25:18934438-18934563 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-218 |
| Cow position: | chr25:4157049-4157274 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 8-196 |
| Cow position: | chr25:10364158-10364349 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 112, 77 |
| Conread position: | 9-216 |
| Cow position: | chr25:13223092-13222865 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 86, 14 |
| Conread position: | 12-127 |
| Cow position: | chr25:14210168-14210059 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 12-131 |
| Cow position: | chr25:26679419-26679298 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 12-188 |
| Cow position: | chr25:23998747-23998931 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 89, 75 |
| Conread position: | 12-211 |
| Cow position: | chr25:14720924-14720714 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 12-215 |
| Cow position: | chr25:17975207-17975411 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 110, 90 |
| Conread position: | 12-216 |
| Cow position: | chr25:4521649-4521872 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 12-217 |
| Cow position: | chr25:18929014-18929228 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 45, 76 |
| Conread position: | 12-218 |
| Cow position: | chr25:18810523-18810306 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 12-223 |
| Cow position: | chr25:11436632-11436850 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 98, 80 |
| Conread position: | 13-122 |
| Cow position: | chr25:26306012-26306123 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 13-138 |
| Cow position: | chr25:31657089-31657212 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 13-210 |
| Cow position: | chr25:26089636-26089841 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 87, 25 |
| Conread position: | 13-217 |
| Cow position: | chr25:11823253-11823466 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 13-217 |
| Cow position: | chr25:16318959-16319176 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 46, 69 |
| Conread position: | 18-122 |
| Cow position: | chr25:2624980-2624876 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-137 |
| Cow position: | chr25:23244818-23244936 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 19-131 |
| Cow position: | chr25:35339005-35339117 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-212 |
| Cow position: | chr25:30462136-30462336 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 66, 19 |
| Conread position: | 23-221 |
| Cow position: | chr25:35109097-35109310 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 129-223 |
| Cow position: | chr25:36036727-36036821 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 81 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.