Cow genome map
| Conread name: | Tra1-TCH01D090010 |
| Conread position: | 1-127 |
| Cow position: | chr5:34787803-34787678 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1-131 |
| Cow position: | chr5:34288024-34288153 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 100, 10 |
| Conread position: | 1-196 |
| Cow position: | chr5:75227980-75228186 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 3-121 |
| Cow position: | chr5:47602037-47601922 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-122 |
| Cow position: | chr5:51298486-51298604 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 3-122 |
| Cow position: | chr5:63300307-63300187 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 95, 11 |
| Conread position: | 3-122 |
| Cow position: | chr5:72895916-72895795 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 3-127 |
| Cow position: | chr5:34562238-34562121 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-127 |
| Cow position: | chr5:45845461-45845583 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 3-131 |
| Cow position: | chr5:6245434-6245563 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-131 |
| Cow position: | chr5:64061242-64061119 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-131 |
| Cow position: | chr5:69383481-69383355 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 3-136 |
| Cow position: | chr5:12654679-12654811 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 3-137 |
| Cow position: | chr5:43982547-43982410 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 3-165 |
| Cow position: | chr5:34639354-34639185 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 3-175 |
| Cow position: | chr5:40740097-40740273 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 84, 16 |
| Conread position: | 3-212 |
| Cow position: | chr5:30487457-30487239 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 76, 125 |
| Conread position: | 3-213 |
| Cow position: | chr5:56877700-56877477 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 88, 160 |
| Conread position: | 3-215 |
| Cow position: | chr5:6528895-6528678 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 10, 39 |
| Conread position: | 3-215 |
| Cow position: | chr5:35976723-35976507 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 94, 11 |
| Conread position: | 3-216 |
| Cow position: | chr5:29460431-29460203 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 57, 32 |
| Conread position: | 3-217 |
| Cow position: | chr5:3626950-3627160 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 16, 116 |
| Conread position: | 3-217 |
| Cow position: | chr5:57934891-57935116 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 88, 11 |
| Conread position: | 4-121 |
| Cow position: | chr5:8149081-8149196 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 4-122 |
| Cow position: | chr5:21237665-21237782 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 60, 10 |
| Conread position: | 4-212 |
| Cow position: | chr5:51065744-51065527 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 115, 177 |
| Conread position: | 5-131 |
| Cow position: | chr5:26548916-26549040 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 5-131 |
| Cow position: | chr5:35190333-35190210 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 5-211 |
| Cow position: | chr5:34625175-34624957 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 84, 9 |
| Conread position: | 5-213 |
| Cow position: | chr5:50684467-50684248 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 68, 14 |
| Conread position: | 5-221 |
| Cow position: | chr5:29903315-29903535 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 87, 57 |
| Conread position: | 5-223 |
| Cow position: | chr5:41165310-41165074 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 6-122 |
| Cow position: | chr5:49508572-49508688 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-131 |
| Cow position: | chr5:60523951-60523832 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 12-122 |
| Cow position: | chr5:57497205-57497315 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-127 |
| Cow position: | chr5:67340102-67339987 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-137 |
| Cow position: | chr5:22667291-22667165 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 12-174 |
| Cow position: | chr5:18579110-18578951 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 103, 75 |
| Conread position: | 12-211 |
| Cow position: | chr5:56467891-56467689 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 90, 37 |
| Conread position: | 12-215 |
| Cow position: | chr5:63192533-63192746 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 68, 106 |
| Conread position: | 12-217 |
| Cow position: | chr5:14314737-14314520 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 13-131 |
| Cow position: | chr5:21721255-21721370 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 13-146 |
| Cow position: | chr5:73253625-73253491 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 18-215 |
| Cow position: | chr5:45397780-45397567 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 121, 23 |
| Conread position: | 19-122 |
| Cow position: | chr5:17554821-17554924 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 84 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-131 |
| Cow position: | chr5:19626790-19626678 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-206 |
| Cow position: | chr5:54425660-54425472 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 103, 17 |
| Conread position: | 79-215 |
| Cow position: | chr5:31144656-31144793 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 126-217 |
| Cow position: | chr5:30629076-30629167 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 82 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.