Cow genome map
| Conread name: | Tra1-TCH01D110036 |
| Conread position: | 281-790 |
| Cow position: | chr11:13615946-13616443 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 20 |
| Conread position: | 298-790 |
| Cow position: | chr11:35534091-35534562 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 10 |
| Conread position: | 300-549 |
| Cow position: | chr11:32266134-32266383 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 303-648 |
| Cow position: | chr11:37326593-37326943 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 241 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 181, 105 |
| Conread position: | 304-690 |
| Cow position: | chr11:56514345-56513977 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 5 |
| Conread position: | 306-527 |
| Cow position: | chr11:8656841-8656621 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 46, 93 |
| Conread position: | 307-790 |
| Cow position: | chr11:75071309-75070835 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 66 |
| Conread position: | 308-549 |
| Cow position: | chr11:63150203-63150444 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 104, 189 |
| Conread position: | 309-790 |
| Cow position: | chr11:8097317-8097804 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 301 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 163, 180 |
| Conread position: | 310-468 |
| Cow position: | chr11:42758309-42758467 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 310-547 |
| Cow position: | chr11:7055841-7056075 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 310-556 |
| Cow position: | chr11:46872640-46872888 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 37, 137 |
| Conread position: | 310-790 |
| Cow position: | chr11:1639621-1640089 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 322 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 16, 29 |
| Conread position: | 311-556 |
| Cow position: | chr11:15423098-15422854 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 214, 0 |
| Conread position: | 312-528 |
| Cow position: | chr11:68243664-68243875 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 313-549 |
| Cow position: | chr11:16790879-16790645 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 313-549 |
| Cow position: | chr11:18923363-18923132 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 39, 86 |
| Conread position: | 313-549 |
| Cow position: | chr11:32079614-32079850 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-549 |
| Cow position: | chr11:48799488-48799723 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 313-553 |
| Cow position: | chr11:13919654-13919417 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 100, 37 |
| Conread position: | 313-737 |
| Cow position: | chr11:19830488-19830914 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 149 |
| Conread position: | 313-787 |
| Cow position: | chr11:1631354-1631816 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 24, 87 |
| Conread position: | 313-790 |
| Cow position: | chr11:65816591-65816133 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 232 |
| Conread position: | 314-489 |
| Cow position: | chr11:24916483-24916314 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 314-492 |
| Cow position: | chr11:3807158-3806980 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-506 |
| Cow position: | chr11:10369177-10369366 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 314-527 |
| Cow position: | chr11:21164054-21164267 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-547 |
| Cow position: | chr11:61619016-61618788 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 314-549 |
| Cow position: | chr11:5533961-5534191 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 314-549 |
| Cow position: | chr11:18187855-18188090 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr11:30530394-30530159 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr11:57378705-57378479 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 314-549 |
| Cow position: | chr11:70057494-70057729 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-556 |
| Cow position: | chr11:76395413-76395172 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 236, 104 |
| Conread position: | 314-647 |
| Cow position: | chr11:31720137-31720465 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 23 |
| Conread position: | 314-648 |
| Cow position: | chr11:2682205-2682520 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 314-686 |
| Cow position: | chr11:64037438-64037081 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 181 |
| Conread position: | 314-690 |
| Cow position: | chr11:15303206-15303565 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 84 |
| Conread position: | 314-690 |
| Cow position: | chr11:77553707-77554062 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 342, 25 |
| Conread position: | 314-790 |
| Cow position: | chr11:31440660-31441123 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 343, 237 |
| Conread position: | 314-790 |
| Cow position: | chr11:40495666-40496163 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 99 |
| Conread position: | 314-790 |
| Cow position: | chr11:48721588-48722052 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 150 |
| Conread position: | 314-790 |
| Cow position: | chr11:65815025-65814560 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 237 |
| Conread position: | 314-790 |
| Cow position: | chr11:82378051-82377569 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 144, 174 |
| Conread position: | 317-544 |
| Cow position: | chr11:40003545-40003768 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 317-549 |
| Cow position: | chr11:33942072-33942304 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 11, 99 |
| Conread position: | 317-556 |
| Cow position: | chr11:72539057-72538818 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 233, 33 |
| Conread position: | 317-558 |
| Cow position: | chr11:61224945-61224708 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 232, 44 |
| Conread position: | 317-648 |
| Cow position: | chr11:26137307-26137631 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 21 |
| Conread position: | 317-790 |
| Cow position: | chr11:56828309-56828770 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 315 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 130, 107 |
| Conread position: | 319-549 |
| Cow position: | chr11:53681038-53680808 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 319-650 |
| Cow position: | chr11:19222342-19222029 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 210 |
| Conread position: | 322-648 |
| Cow position: | chr11:36263800-36263489 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 236 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 163, 33 |
| Conread position: | 352-790 |
| Cow position: | chr11:65837754-65837329 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 291 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 16, 200 |
| Conread position: | 358-790 |
| Cow position: | chr11:18621566-18622013 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 300 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 173, 124 |
| Conread position: | 364-790 |
| Cow position: | chr11:34807804-34807400 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 343, 184 |
| Conread position: | 366-549 |
| Cow position: | chr11:18183268-18183085 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 389-547 |
| Cow position: | chr11:31605796-31605954 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.