Cow genome map
| Conread name: | Tra1-TCH01D110036 |
| Conread position: | 300-549 |
| Cow position: | chr13:40218550-40218300 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 305-650 |
| Cow position: | chr13:51890685-51891007 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 243 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 28, 152 |
| Conread position: | 307-549 |
| Cow position: | chr13:43706500-43706261 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 226, 32 |
| Conread position: | 308-549 |
| Cow position: | chr13:17564026-17564267 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 310-549 |
| Cow position: | chr13:37451460-37451699 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 312-790 |
| Cow position: | chr13:49097690-49097227 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 318 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 18, 183 |
| Conread position: | 313-518 |
| Cow position: | chr13:42720717-42720920 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 43, 37 |
| Conread position: | 313-541 |
| Cow position: | chr13:19195316-19195542 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 145, 48 |
| Conread position: | 313-548 |
| Cow position: | chr13:42038617-42038381 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 313-549 |
| Cow position: | chr13:20687320-20687084 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-549 |
| Cow position: | chr13:41895327-41895562 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 313-549 |
| Cow position: | chr13:48188236-48188007 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 40, 178 |
| Conread position: | 313-549 |
| Cow position: | chr13:54071029-54070793 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-549 |
| Cow position: | chr13:60620248-60620482 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 313-556 |
| Cow position: | chr13:14728007-14727771 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 236, 177 |
| Conread position: | 313-556 |
| Cow position: | chr13:22789553-22789312 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 43, 37 |
| Conread position: | 314-462 |
| Cow position: | chr13:2361492-2361639 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 314-479 |
| Cow position: | chr13:10377272-10377112 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 314-483 |
| Cow position: | chr13:62674722-62674553 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-547 |
| Cow position: | chr13:24840668-24840902 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 18, 88 |
| Conread position: | 314-547 |
| Cow position: | chr13:58460200-58460423 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 314-549 |
| Cow position: | chr13:23592162-23591922 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 18, 88 |
| Conread position: | 314-556 |
| Cow position: | chr13:48618552-48618793 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 236, 33 |
| Conread position: | 314-558 |
| Cow position: | chr13:18438872-18438635 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 19, 8 |
| Conread position: | 314-645 |
| Cow position: | chr13:12400750-12400432 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 0 |
| Conread position: | 314-650 |
| Cow position: | chr13:33242818-33243156 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 232 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 222, 213 |
| Conread position: | 314-690 |
| Cow position: | chr13:26714218-26713855 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 239 |
| Conread position: | 314-729 |
| Cow position: | chr13:42030984-42031385 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 238 |
| Conread position: | 314-740 |
| Cow position: | chr13:57251550-57251968 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 251 |
| Conread position: | 314-790 |
| Cow position: | chr13:1021803-1021338 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 237 |
| Conread position: | 314-790 |
| Cow position: | chr13:7548996-7548531 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 237 |
| Conread position: | 314-790 |
| Cow position: | chr13:10806045-10806509 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 215 |
| Conread position: | 314-790 |
| Cow position: | chr13:12538656-12538191 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 230 |
| Conread position: | 314-790 |
| Cow position: | chr13:17472547-17472082 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 237 |
| Conread position: | 314-790 |
| Cow position: | chr13:48439316-48438854 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 187 |
| Conread position: | 317-544 |
| Cow position: | chr13:32726199-32725972 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 106, 26 |
| Conread position: | 317-549 |
| Cow position: | chr13:62147921-62147695 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 39, 33 |
| Conread position: | 317-790 |
| Cow position: | chr13:3005310-3005773 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 233 |
| Conread position: | 317-790 |
| Cow position: | chr13:35519516-35519978 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 192 |
| Conread position: | 319-648 |
| Cow position: | chr13:38393410-38393721 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 0 |
| Conread position: | 322-648 |
| Cow position: | chr13:15723414-15723712 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 329-547 |
| Cow position: | chr13:3081281-3081497 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 150, 41 |
| Conread position: | 335-790 |
| Cow position: | chr13:51596137-51596580 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 309 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 317, 15 |
| Conread position: | 352-786 |
| Cow position: | chr13:54720817-54721238 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 292 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 304, 63 |
| Conread position: | 382-757 |
| Cow position: | chr13:32843038-32843413 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 113 |
Show alignments to all cow chromosomes.