Cow genome map


           Conread name:
           Tra1-TCH01D110036
        

               Conread position:
               300-690
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 252
               

               Conread position:
               302-699
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               352, 13
               

               Conread position:
               305-549
               

               Cow position:
               
               

               Alignm length:
               246
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 44
               

               Conread position:
               306-544
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               219, 7
               

               Conread position:
               307-549
               

               Cow position:
               
               

               Alignm length:
               243
               

               Alignm identity:
               176
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               308-556
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               242, 175
               

               Conread position:
               308-556
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               242, 175
               

               Conread position:
               308-690
               

               Cow position:
               
               

               Alignm length:
               391
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               337, 242
               

               Conread position:
               310-790
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               348, 179
               

               Conread position:
               312-508
               

               Cow position:
               
               

               Alignm length:
               197
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               312-648
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               239, 0
               

               Conread position:
               313-549
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               313-549
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 129
               

               Conread position:
               313-556
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 121
               

               Conread position:
               313-644
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               227
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               238, 0
               

               Conread position:
               313-648
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               313-690
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               343, 227
               

               Conread position:
               313-743
               

               Cow position:
               
               

               Alignm length:
               435
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 138
               

               Conread position:
               313-786
               

               Cow position:
               
               

               Alignm length:
               478
               

               Alignm identity:
               312
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               379, 85
               

               Conread position:
               313-790
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               339, 238
               

               Conread position:
               314-533
               

               Cow position:
               
               

               Alignm length:
               221
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               199, 153
               

               Conread position:
               314-548
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               192, 0
               

               Conread position:
               314-549
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               314-549
               

               Cow position:
               
               

               Alignm length:
               248
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               314-549
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               174
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               314-549
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               177
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               314-549
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               170, 0
               

               Conread position:
               314-549
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               314-552
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               314-556
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               236, 0
               

               Conread position:
               314-556
               

               Cow position:
               
               

               Alignm length:
               246
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               19, 86
               

               Conread position:
               314-646
               

               Cow position:
               
               

               Alignm length:
               335
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 109
               

               Conread position:
               314-648
               

               Cow position:
               
               

               Alignm length:
               335
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               314-690
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               256
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               336, 32
               

               Conread position:
               314-787
               

               Cow position:
               
               

               Alignm length:
               482
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 237
               

               Conread position:
               314-790
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               341, 237
               

               Conread position:
               314-790
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 16
               

               Conread position:
               317-474
               

               Cow position:
               
               

               Alignm length:
               158
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               317-648
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               237
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               15, 238
               

               Conread position:
               317-648
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               236
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               234, 0
               

               Conread position:
               317-743
               

               Cow position:
               
               

               Alignm length:
               433
               

               Alignm identity:
               291
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               341, 103
               

               Conread position:
               320-644
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               321-650
               

               Cow position:
               
               

               Alignm length:
               333
               

               Alignm identity:
               231
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               129, 75
               

               Conread position:
               324-468
               

               Cow position:
               
               

               Alignm length:
               145
               

               Alignm identity:
               107
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               140, 0
               

               Conread position:
               324-647
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 0
               

               Conread position:
               325-556
               

               Cow position:
               
               

               Alignm length:
               234
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               27, 12
               

               Conread position:
               325-768
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               329, 221
               

               Conread position:
               331-790
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               258, 7
               

               Conread position:
               335-647
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               232
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               156, 85
               

               Conread position:
               352-729
               

               Cow position:
               
               

               Alignm length:
               388
               

               Alignm identity:
               259
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               93, 146
               

               Conread position:
               355-648
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               213
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               356-646
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               169, 26
               

               Conread position:
               366-549
               

               Cow position:
               
               

               Alignm length:
               184
               

               Alignm identity:
               132
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               151, 0
               

               Conread position:
               408-549
               

               Cow position:
               
               

               Alignm length:
               142
               

               Alignm identity:
               104
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               424-790
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               234, 121
               

               Conread position:
               520-790
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               212
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               70, 44
               
Show alignments to all cow chromosomes.