Cow genome map
| Conread name: | Tra1-TCH01D110036 |
| Conread position: | 300-690 |
| Cow position: | chr15:18626609-18626233 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 252 |
| Conread position: | 302-699 |
| Cow position: | chr15:29310890-29311268 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 352, 13 |
| Conread position: | 305-549 |
| Cow position: | chr15:9345855-9345615 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 44 |
| Conread position: | 306-544 |
| Cow position: | chr15:18249172-18248934 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 219, 7 |
| Conread position: | 307-549 |
| Cow position: | chr15:22979387-22979146 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 308-556 |
| Cow position: | chr15:1234389-1234153 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 242, 175 |
| Conread position: | 308-556 |
| Cow position: | chr15:1241739-1241503 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 242, 175 |
| Conread position: | 308-690 |
| Cow position: | chr15:26614547-26614175 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 242 |
| Conread position: | 310-790 |
| Cow position: | chr15:20133870-20134334 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 348, 179 |
| Conread position: | 312-508 |
| Cow position: | chr15:32442987-32443182 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 312-648 |
| Cow position: | chr15:42654482-42654800 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 0 |
| Conread position: | 313-549 |
| Cow position: | chr15:32450799-32451033 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 313-549 |
| Cow position: | chr15:44592058-44592294 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 129 |
| Conread position: | 313-556 |
| Cow position: | chr15:10408279-10408036 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 121 |
| Conread position: | 313-644 |
| Cow position: | chr15:34165088-34164775 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 238, 0 |
| Conread position: | 313-648 |
| Cow position: | chr15:44645176-44644861 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 313-690 |
| Cow position: | chr15:40814182-40813821 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 343, 227 |
| Conread position: | 313-743 |
| Cow position: | chr15:22871880-22872303 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 138 |
| Conread position: | 313-786 |
| Cow position: | chr15:234919-235380 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 312 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 379, 85 |
| Conread position: | 313-790 |
| Cow position: | chr15:51316745-51316279 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 238 |
| Conread position: | 314-533 |
| Cow position: | chr15:14189089-14188873 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 199, 153 |
| Conread position: | 314-548 |
| Cow position: | chr15:38621637-38621411 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 314-549 |
| Cow position: | chr15:316127-316362 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr15:767342-767095 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 314-549 |
| Cow position: | chr15:6290273-6290037 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 314-549 |
| Cow position: | chr15:15372777-15373013 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 314-549 |
| Cow position: | chr15:17293479-17293253 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 314-549 |
| Cow position: | chr15:45870016-45870251 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-552 |
| Cow position: | chr15:40569270-40569508 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-556 |
| Cow position: | chr15:11729672-11729429 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 236, 0 |
| Conread position: | 314-556 |
| Cow position: | chr15:28063322-28063080 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 19, 86 |
| Conread position: | 314-646 |
| Cow position: | chr15:20344058-20344371 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 109 |
| Conread position: | 314-648 |
| Cow position: | chr15:28617522-28617211 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 314-690 |
| Cow position: | chr15:27276140-27275779 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 256 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 336, 32 |
| Conread position: | 314-787 |
| Cow position: | chr15:39716231-39716693 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 237 |
| Conread position: | 314-790 |
| Cow position: | chr15:5086830-5086365 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 237 |
| Conread position: | 314-790 |
| Cow position: | chr15:12687463-12687935 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 317-474 |
| Cow position: | chr15:36862805-36862648 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 317-648 |
| Cow position: | chr15:6185013-6185330 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 237 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 15, 238 |
| Conread position: | 317-648 |
| Cow position: | chr15:45005825-45005512 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 236 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 234, 0 |
| Conread position: | 317-743 |
| Cow position: | chr15:47152878-47152471 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 341, 103 |
| Conread position: | 320-644 |
| Cow position: | chr15:22578841-22578528 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 321-650 |
| Cow position: | chr15:1993485-1993162 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 231 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 129, 75 |
| Conread position: | 324-468 |
| Cow position: | chr15:12773769-12773626 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 324-647 |
| Cow position: | chr15:45997029-45996702 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 325-556 |
| Cow position: | chr15:17220368-17220597 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 27, 12 |
| Conread position: | 325-768 |
| Cow position: | chr15:20126966-20127399 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 221 |
| Conread position: | 331-790 |
| Cow position: | chr15:25072330-25071869 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 7 |
| Conread position: | 335-647 |
| Cow position: | chr15:20450676-20450988 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 232 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 156, 85 |
| Conread position: | 352-729 |
| Cow position: | chr15:24539620-24539236 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 259 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 93, 146 |
| Conread position: | 355-648 |
| Cow position: | chr15:33484263-33483989 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 356-646 |
| Cow position: | chr15:601513-601794 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 169, 26 |
| Conread position: | 366-549 |
| Cow position: | chr15:22485053-22485235 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 408-549 |
| Cow position: | chr15:15263614-15263755 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 424-790 |
| Cow position: | chr15:15137185-15137537 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 234, 121 |
| Conread position: | 520-790 |
| Cow position: | chr15:14188657-14188375 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 70, 44 |
Show alignments to all cow chromosomes.