Cow genome map
| Conread name: | Tra1-TCH01D110036 |
| Conread position: | 292-557 |
| Cow position: | chr16:46375549-46375814 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 95, 23 |
| Conread position: | 302-789 |
| Cow position: | chr16:26371809-26371333 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 249 |
| Conread position: | 305-790 |
| Cow position: | chr16:23524498-23524983 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 74 |
| Conread position: | 308-509 |
| Cow position: | chr16:3882897-3882696 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 48, 42 |
| Conread position: | 309-785 |
| Cow position: | chr16:43170090-43170543 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 316 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 384, 166 |
| Conread position: | 310-549 |
| Cow position: | chr16:3879696-3879457 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 310-549 |
| Cow position: | chr16:12381957-12382196 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 310-790 |
| Cow position: | chr16:1626610-1626147 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 89 |
| Conread position: | 310-790 |
| Cow position: | chr16:35442330-35442802 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 346, 123 |
| Conread position: | 312-553 |
| Cow position: | chr16:44525039-44525277 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 313-548 |
| Cow position: | chr16:27116655-27116890 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-549 |
| Cow position: | chr16:2782692-2782921 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 182, 0 |
| Conread position: | 313-549 |
| Cow position: | chr16:22319466-22319230 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-549 |
| Cow position: | chr16:30580409-30580645 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 313-643 |
| Cow position: | chr16:55460952-55460643 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 313-647 |
| Cow position: | chr16:11299867-11299559 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 66, 42 |
| Conread position: | 313-690 |
| Cow position: | chr16:30602667-30602301 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 276, 143 |
| Conread position: | 313-690 |
| Cow position: | chr16:35514095-35513733 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 87 |
| Conread position: | 313-790 |
| Cow position: | chr16:2520241-2519774 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 238 |
| Conread position: | 314-545 |
| Cow position: | chr16:37427609-37427835 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 314-546 |
| Cow position: | chr16:19260934-19261166 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-547 |
| Cow position: | chr16:31536138-31536371 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-548 |
| Cow position: | chr16:30978378-30978612 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr16:2251578-2251345 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 314-549 |
| Cow position: | chr16:3884757-3884992 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-549 |
| Cow position: | chr16:8915258-8915025 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 146, 92 |
| Conread position: | 314-549 |
| Cow position: | chr16:23950333-23950098 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-558 |
| Cow position: | chr16:20979932-20979682 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 18, 89 |
| Conread position: | 314-558 |
| Cow position: | chr16:52807826-52808071 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 82, 128 |
| Conread position: | 314-561 |
| Cow position: | chr16:55253331-55253568 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 236, 44 |
| Conread position: | 314-643 |
| Cow position: | chr16:32768878-32768567 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 0 |
| Conread position: | 314-648 |
| Cow position: | chr16:34946799-34947129 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 44 |
| Conread position: | 314-689 |
| Cow position: | chr16:50448938-50449298 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 265 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 83, 62 |
| Conread position: | 314-690 |
| Cow position: | chr16:53810956-53811325 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 270 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 119, 46 |
| Conread position: | 314-734 |
| Cow position: | chr16:19679830-19680233 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 284 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 329, 184 |
| Conread position: | 314-743 |
| Cow position: | chr16:53835429-53835870 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 32 |
| Conread position: | 314-790 |
| Cow position: | chr16:1156242-1155780 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 237 |
| Conread position: | 314-790 |
| Cow position: | chr16:23968165-23967712 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 307 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 344, 62 |
| Conread position: | 317-547 |
| Cow position: | chr16:54303150-54302924 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 317-549 |
| Cow position: | chr16:26958505-26958733 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 317-554 |
| Cow position: | chr16:1633864-1633629 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 317-558 |
| Cow position: | chr16:43117367-43117600 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 233, 114 |
| Conread position: | 317-648 |
| Cow position: | chr16:22832429-22832739 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 178, 0 |
| Conread position: | 317-790 |
| Cow position: | chr16:53129061-53128596 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 232 |
| Conread position: | 317-790 |
| Cow position: | chr16:53605141-53605594 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 316 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 196, 107 |
| Conread position: | 319-544 |
| Cow position: | chr16:4837773-4837998 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 319-790 |
| Cow position: | chr16:37095019-37095481 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 232 |
| Conread position: | 321-694 |
| Cow position: | chr16:27841621-27841990 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 132 |
| Conread position: | 322-549 |
| Cow position: | chr16:34778603-34778837 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 16, 119 |
| Conread position: | 323-549 |
| Cow position: | chr16:35411084-35411310 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 323-556 |
| Cow position: | chr16:43173772-43173544 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 325-743 |
| Cow position: | chr16:18062004-18062419 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 65 |
| Conread position: | 352-790 |
| Cow position: | chr16:18356521-18356964 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 314 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 212, 45 |
| Conread position: | 366-643 |
| Cow position: | chr16:17778376-17778663 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 368-544 |
| Cow position: | chr16:33910453-33910629 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 399-790 |
| Cow position: | chr16:46440865-46441245 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 268 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 249, 152 |
| Conread position: | 404-549 |
| Cow position: | chr16:31795054-31794909 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 439-688 |
| Cow position: | chr16:56223382-56223133 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 116 |
Show alignments to all cow chromosomes.